View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_80 (Length: 328)
Name: NF6863A_low_80
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 5395260 - 5395566
Alignment:
| Q |
7 |
gaagaaatagagcctcttccacctctttgtattttactgttttcatcaaccggaacaaaatgaaaacttgcggaacgttctgaattcaagacactattgc |
106 |
Q |
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| T |
5395260 |
gaagaaatagagcctcttccacctctttgtattttactgttttcatcaactggaacaaaatgaaaactcgcggaacgttctgaattcaagacactattgc |
5395359 |
T |
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| Q |
107 |
tttgttccttctctttttctttctccttctccttttcatcctcagcttgatgatcctgaagaaacttcttcatgcaactaagctctttctcaaggctttg |
206 |
Q |
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| T |
5395360 |
tttgttccttctctttttctttctccttctccttttcatcctcagcttgatgatcctgaagaaacttcttcatgcaactaagctctttctcaaggctttg |
5395459 |
T |
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| Q |
207 |
aatacgtgagtaggttgaattcatagcttctttaagttgtgcattttggcggagagtggtgtcgagttggagaaattctctaagtgaggttcgttgtact |
306 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5395460 |
aatacgcgagtaggttgaattcatagcttctttaagttgtgcattttggcggagagtggtgtcgagttggagaaattctctaagtgaggttcgttgtact |
5395559 |
T |
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| Q |
307 |
tctacat |
313 |
Q |
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||||||| |
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| T |
5395560 |
tctacat |
5395566 |
T |
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