View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_88 (Length: 313)
Name: NF6863A_low_88
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_88 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 23 - 311
Target Start/End: Original strand, 44837 - 45125
Alignment:
| Q |
23 |
catttcgccatttgcgttatgtgaacattgctgagtgtgatcgaatcaatcccttcttctctttgctgagtgatgctccaaagttaatgatgctgaaatt |
122 |
Q |
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| T |
44837 |
catttcgccatttgcgttatttgaacattgctgagtgtgatcgaatcaatcccttcttctctttgctgagtgattctccaaagttaatgatgctgaaatt |
44936 |
T |
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| Q |
123 |
aatcatatcatttttaattcctgattcgaagaagttatgcacatttccaaaaccagcatcactgctaaaggaatcaagcttcttgtctcacttaaacact |
222 |
Q |
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| T |
44937 |
aatcatatcatttttaattcctgattcgaagaagttatgcacatttccaaaaccagcatcactgccaaaggaatcaagcttcttgtctcacttaaacact |
45036 |
T |
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| Q |
223 |
tttcatcttgattcgggaagttttttcgtcgatcatggatctttagcttcgttacaggtactgaaaaatctacaacacattgatctctg |
311 |
Q |
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| T |
45037 |
tttcatcttgattcgggaagtttttctgtcgatcatggatctttagcttcgttacaggtactgaaaaatctacaacacattgaactctg |
45125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 41921895 - 41922021
Alignment:
| Q |
94 |
gatgctccaaagttaatgatgctgaaattaatcatatcatttttaattcctgattcgaagaagttatgcacatttccaaaaccagcatcactgctaaagg |
193 |
Q |
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| T |
41921895 |
gatgctccaaatttaatgatgctggaattaatcatatcctttctg-ttcctaatttggtgaagtt--gcgcatttccaaaaccagtgtcactgccaatgg |
41921991 |
T |
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| Q |
194 |
aatcaagcttcttgtctcacttaaacactt |
223 |
Q |
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| T |
41921992 |
agtcaagcttcttgcctctcttaaacactt |
41922021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 41922480 - 41922513
Alignment:
| Q |
278 |
aggtactgaaaaatctacaacacattgatctctg |
311 |
Q |
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| T |
41922480 |
aggtactgaaaaatctacaacacattgaactctg |
41922513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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