View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_9 (Length: 450)
Name: NF6863A_low_9
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 5 - 444
Target Start/End: Complemental strand, 44648623 - 44648184
Alignment:
| Q |
5 |
ccaattctatttcatcttcttcaacttcttccagagcattttctgcagttcttagtgcgacgttaaggaagtgttgcaagtttccttcaccttcactcac |
104 |
Q |
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| T |
44648623 |
ccaattctatttcatcttcttcaacttcttccaaagcattttctgcagttcttagtgcaaagttaaggaagtgttgcaagtttccttcaccttcactcac |
44648524 |
T |
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| Q |
105 |
ttgtctgaggcttgatgcagagaattcacacattggcgtgtggcagaaaggtgcaggtcctcgttcggaatcaaattggattatgatggttgagttagaa |
204 |
Q |
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| T |
44648523 |
ttgtctgaggcttgatgcagagaattcacacattggagtgtggcagaaaggtgcaggtcctcgttcggaatcaaattggattatgatggttgagttagaa |
44648424 |
T |
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| Q |
205 |
aggnnnnnnngtgcttctgtgccagagaaggcaaagccagaggaattaagtaaaaatggtttggatgatgaacagaaaattgctttgcagatgatagaag |
304 |
Q |
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| T |
44648423 |
aggaaaaaaagtgcttctgtgccagagaaggcaaagccagaggaattaagtaaaaatggtttggatgatgaacagaaaattgctttgcagatgatagaag |
44648324 |
T |
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| Q |
305 |
aacttctcaatagaaactaaactctatgctttcactttcatgtgtggacctcattgaaggagtttaatttgatgtccatgatgatgtcttttgtttgttt |
404 |
Q |
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| T |
44648323 |
aacttctcaatagaaactaaactctatgctttaactttcatgtgtggacctcattgaaggagtttaatttgatgtccatgatgatgtcttttgtttgttt |
44648224 |
T |
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| Q |
405 |
gttttgtcctaagtaagagtgtgatatatcatgatatatt |
444 |
Q |
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| T |
44648223 |
gttttgtcctaagtaagagtgtgatatatcatgatatatt |
44648184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 2428518 - 2428397
Alignment:
| Q |
76 |
tgttgcaagtttccttcaccttcactcacttgtctgaggcttgatgcagagaattcacacattggcgtgtggcagaaaggtgcaggtcctcgttcggaat |
175 |
Q |
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|||||||||| ||||||||||| ||||||||||| |||||||| | |||||||||||| |||| |||||||||||| | ||||| ||||||||||| | |
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| T |
2428518 |
tgttgcaagtcaccttcaccttccctcacttgtctaaggcttgacactgagaattcacactttggagtgtggcagaaaagagcaggacctcgttcggact |
2428419 |
T |
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| Q |
176 |
caaattggattatgatggttga |
197 |
Q |
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| T |
2428418 |
cgagctggatcatgatggttga |
2428397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 2480418 - 2480354
Alignment:
| Q |
97 |
tcactcacttgtctgaggcttgatgcagagaattcacacattggcgtgtggcagaaaggtgcagg |
161 |
Q |
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| T |
2480418 |
tcactcacttgtttgaggcttgatgctgataattctcacataggagtctggcaaaaaggagcagg |
2480354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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