View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_95 (Length: 308)
Name: NF6863A_low_95
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_95 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 3 - 308
Target Start/End: Complemental strand, 2838812 - 2838507
Alignment:
| Q |
3 |
agacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaaggagaatctct |
102 |
Q |
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| T |
2838812 |
agacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaaggagaatctct |
2838713 |
T |
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| Q |
103 |
ttttggaaaaggaatttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgtgaagaaaga |
202 |
Q |
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| T |
2838712 |
ttttggaaaaggaacttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgtgaagaaaga |
2838613 |
T |
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| Q |
203 |
ttgcgctgatgcggaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagtgtgcaatgatatgcatagatccttttatgatactgagtct |
302 |
Q |
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| T |
2838612 |
ttgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgatactgagtct |
2838513 |
T |
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| Q |
303 |
gatgtt |
308 |
Q |
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|||||| |
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| T |
2838512 |
gatgtt |
2838507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 2842913 - 2842784
Alignment:
| Q |
3 |
agacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaaggagaatctct |
102 |
Q |
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|||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |
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| T |
2842913 |
agacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaagggaaaatcttt |
2842814 |
T |
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| Q |
103 |
ttttggaaaaggaatttgaaagttataggc |
132 |
Q |
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| T |
2842813 |
ttttggaaaaggaacttgaaacttttaggc |
2842784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 2842573 - 2842533
Alignment:
| Q |
268 |
atgatatgcatagatccttttatgatactgagtctgatgtt |
308 |
Q |
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| T |
2842573 |
atgatttgcatagctccttttatgatactgagtctgatgtt |
2842533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 2842705 - 2842671
Alignment:
| Q |
136 |
cactttcatttgaaacttgtgatgatccatcacag |
170 |
Q |
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| T |
2842705 |
cactttcatttgaaacatgtgatgatccatcacag |
2842671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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