View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_high_3 (Length: 559)
Name: NF6864A_high_3
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_high_3 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 559
Target Start/End: Original strand, 38217334 - 38217843
Alignment:
| Q |
16 |
aacaatatagctactctaaaccaacttgggtcgaagttgtggtgttaatttagaatattgaagtgtgctccttttaagatttcaaatttaatatctttga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| ||| |
|
|
| T |
38217334 |
aacaatatagctactctaaaccaacttgggtcgaagttgtggtgttaatttagattattgaagtgtgctccttttaagattttagatttaatatctctga |
38217433 |
T |
|
| Q |
116 |
tgtcaagttaatttgtgttttacttaatttctatgaattagtttgtgttttgctttaaaatagaccccgcaaatggatggtggaatcgaaccatttaaat |
215 |
Q |
| |
|
|||||| |||| ||| |||||||||| |||| |||||||||||||||||||| | |||||| ||||||| |||| |
|
|
| T |
38217434 |
tgtcaa---------------------tttcgatggattagtttgtattttactttaaaatagaccccgcaagtagatggtagaatcga-------aaat |
38217505 |
T |
|
| Q |
216 |
taatcgttccttnnnnnnnntatagctactttagtctaacagcatcttccaagttccaagcatataatgcaaagtacttacactatgagggctccacaat |
315 |
Q |
| |
|
| ||| || |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38217506 |
ttatcctt--gaaaaaaaaatatagctactctagtctaacagcatcttccaaattccaagcatataatgttaagtacttacactatgagggctccacaat |
38217603 |
T |
|
| Q |
316 |
gttaagtacttactctagttgctaattttagtataggtccacaattgccacatagagtttaagaatatcaacacaatgttaagtacttacactatgaagg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217604 |
gttaagtacttactctagttgctaattttagtataggtccacaattgccacatagagtttaagaatatcaacacaatgttaagtacttacactatgaagg |
38217703 |
T |
|
| Q |
416 |
ccccacaaatgtgttaagaagtgtctcactttgaaaattgtccttaattacatgtgaatgtcagtcaactcattcatctccaattttgtgaatacttaag |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217704 |
ccccacaaatgtgttaagaagtgtctcactttgaaaattgtccttaattacatgtgaat----gtcaactcattcatctccaattttgtgaatacttaag |
38217799 |
T |
|
| Q |
516 |
gattatttatttgagatattccgattaatataaggtaaaaataa |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217800 |
gattatttatttgagatattccgattaatataaggtaaaaataa |
38217843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University