View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_104 (Length: 344)
Name: NF6864A_low_104
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_104 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 10010941 - 10010614
Alignment:
| Q |
13 |
aatatcgaacattttgccatttcttcctctcaaaacaccttaacaatgagatcataacaaaattcaattaatgtctcaaattatgcaattcaataacatc |
112 |
Q |
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| T |
10010941 |
aatattgaacattttgccatttcttcctctcaaaacaccttcacaatgagatcataacaaaattcaattaatgtctcaaattatgcaattcaatcacatc |
10010842 |
T |
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| Q |
113 |
agaaaattttatttgatctaattaagaatacacatggccaacaaacnnnnnnnnnnnnncaaccttattatgcatgaatgatgggaaaaaactaaaccaa |
212 |
Q |
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| T |
10010841 |
agaaaattttatttgatctaattaagaatacacatggccaacaaac---aaaaaaaaaacaaccttattatgcatgaatgaagggaaaaaactaaaccaa |
10010745 |
T |
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| Q |
213 |
tgtttggaaattttnnnnnnnnnnccatagtatatacaaaaccattcatcaatagatgcatgaccaatttcaattttattcatgaaatacgtttgtagcc |
312 |
Q |
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| T |
10010744 |
tgtttggaaa-ttaaaaaaaaaaaccatagtatatacaaaaccattcatcaatagatgcatgaccaatttcaattttattcatgaaatacgtttgtagcc |
10010646 |
T |
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| Q |
313 |
aataaacaaaaacttagatcttcaacggtcgg |
344 |
Q |
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| T |
10010645 |
aataaacaaaaacttagatcttcaacggtcgg |
10010614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 9989252 - 9989192
Alignment:
| Q |
19 |
gaacattttgccatttcttcctctcaaaacaccttaacaatgagatcataacaaaattcaa |
79 |
Q |
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| T |
9989252 |
gaaccttttgccatttcttcctctcaaaacaacctcacaaagaaatcacaacaaaattcaa |
9989192 |
T |
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