View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_11 (Length: 498)

Name: NF6864A_low_11
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_11
NF6864A_low_11
[»] chr7 (27 HSPs)
chr7 (23-318)||(7653441-7653736)
chr7 (170-297)||(35496540-35496667)
chr7 (170-296)||(27123286-27123412)
chr7 (182-302)||(28770501-28770621)
chr7 (172-304)||(44537355-44537487)
chr7 (170-302)||(35731299-35731430)
chr7 (182-297)||(28663106-28663221)
chr7 (171-303)||(21727367-21727499)
chr7 (166-297)||(43234798-43234928)
chr7 (170-275)||(39320971-39321076)
chr7 (169-276)||(25886181-25886288)
chr7 (195-297)||(14651357-14651459)
chr7 (170-297)||(3692889-3693017)
chr7 (182-279)||(43224072-43224169)
chr7 (168-272)||(26239533-26239637)
chr7 (182-276)||(34117859-34117953)
chr7 (199-275)||(9718983-9719059)
chr7 (182-297)||(35923474-35923585)
chr7 (208-302)||(8920665-8920759)
chr7 (182-275)||(10200593-10200685)
chr7 (170-251)||(27337709-27337790)
chr7 (169-273)||(40753938-40754041)
chr7 (231-270)||(48488172-48488211)
chr7 (170-240)||(18801052-18801122)
chr7 (169-206)||(7968617-7968654)
chr7 (169-294)||(29711463-29711588)
chr7 (242-302)||(17157731-17157791)
[»] chr4 (39 HSPs)
chr4 (166-297)||(51834922-51835053)
chr4 (170-297)||(37138129-37138256)
chr4 (170-270)||(35777693-35777793)
chr4 (166-302)||(45900111-45900247)
chr4 (166-297)||(7852511-7852642)
chr4 (170-304)||(50427001-50427135)
chr4 (170-297)||(7444352-7444480)
chr4 (170-279)||(8297883-8297992)
chr4 (188-297)||(36702814-36702919)
chr4 (168-304)||(47995697-47995833)
chr4 (170-272)||(50341859-50341961)
chr4 (182-297)||(31429301-31429416)
chr4 (170-300)||(24229610-24229740)
chr4 (168-306)||(37440836-37440974)
chr4 (166-312)||(53014158-53014304)
chr4 (182-303)||(31174612-31174733)
chr4 (166-252)||(49084412-49084499)
chr4 (170-300)||(34391671-34391801)
chr4 (172-273)||(41462063-41462164)
chr4 (166-278)||(24175385-24175496)
chr4 (170-237)||(51736366-51736433)
chr4 (228-297)||(23605634-23605703)
chr4 (170-272)||(42222967-42223069)
chr4 (166-272)||(49400620-49400726)
chr4 (189-297)||(8261139-8261247)
chr4 (189-297)||(8274556-8274664)
chr4 (182-259)||(27953046-27953123)
chr4 (170-272)||(20394650-20394750)
chr4 (199-275)||(13585250-13585326)
chr4 (208-302)||(7628009-7628102)
chr4 (170-268)||(25115260-25115357)
chr4 (234-276)||(37060625-37060667)
chr4 (170-278)||(12618681-12618788)
chr4 (243-294)||(14031282-14031333)
chr4 (166-212)||(23504749-23504795)
chr4 (221-275)||(24396249-24396303)
chr4 (188-297)||(31690412-31690520)
chr4 (169-217)||(23605974-23606022)
chr4 (242-302)||(33559098-33559158)
[»] chr5 (25 HSPs)
chr5 (170-302)||(18229564-18229696)
chr5 (170-297)||(30104816-30104943)
chr5 (170-306)||(30501097-30501234)
chr5 (170-306)||(30541440-30541577)
chr5 (170-271)||(9276573-9276674)
chr5 (182-274)||(16667282-16667374)
chr5 (169-300)||(3140825-3140956)
chr5 (168-306)||(8221132-8221270)
chr5 (182-276)||(7719228-7719322)
chr5 (166-297)||(17692270-17692400)
chr5 (169-300)||(41047997-41048128)
chr5 (169-306)||(112444-112581)
chr5 (170-274)||(15720079-15720183)
chr5 (182-297)||(8208203-8208318)
chr5 (187-273)||(2918587-2918675)
chr5 (182-302)||(34899099-34899218)
chr5 (228-279)||(7968460-7968511)
chr5 (172-251)||(40530448-40530527)
chr5 (169-299)||(5815036-5815166)
chr5 (199-297)||(13480060-13480159)
chr5 (242-297)||(31672495-31672550)
chr5 (172-267)||(39558764-39558859)
chr5 (241-306)||(5758644-5758709)
chr5 (169-270)||(23117221-23117321)
chr5 (242-303)||(29342401-29342462)
[»] chr8 (31 HSPs)
chr8 (168-303)||(27801187-27801322)
chr8 (167-306)||(4384094-4384232)
chr8 (170-297)||(42636333-42636460)
chr8 (170-304)||(28207636-28207770)
chr8 (166-306)||(1369818-1369957)
chr8 (170-297)||(33013057-33013183)
chr8 (172-276)||(3146050-3146158)
chr8 (171-273)||(1135174-1135276)
chr8 (182-306)||(2258049-2258173)
chr8 (182-251)||(167857-167926)
chr8 (169-280)||(33949534-33949645)
chr8 (172-251)||(2888729-2888812)
chr8 (182-268)||(35901955-35902041)
chr8 (170-306)||(12954740-12954876)
chr8 (170-297)||(37427200-37427329)
chr8 (180-311)||(45197399-45197530)
chr8 (199-277)||(36355944-36356022)
chr8 (182-302)||(12829835-12829953)
chr8 (182-241)||(5588984-5589043)
chr8 (170-241)||(17081394-17081465)
chr8 (219-302)||(26750611-26750694)
chr8 (168-306)||(9735263-9735400)
chr8 (182-268)||(12684490-12684576)
chr8 (171-268)||(24695760-24695856)
chr8 (241-305)||(3463501-3463565)
chr8 (182-250)||(3520822-3520890)
chr8 (170-240)||(37813426-37813497)
chr8 (228-274)||(884486-884532)
chr8 (166-212)||(12544988-12545034)
chr8 (249-302)||(16723169-16723222)
chr8 (187-251)||(33067531-33067595)
[»] chr1 (26 HSPs)
chr1 (170-301)||(47187785-47187915)
chr1 (188-302)||(2864172-2864285)
chr1 (170-303)||(38748683-38748815)
chr1 (187-303)||(43396976-43397092)
chr1 (170-297)||(45640559-45640685)
chr1 (166-273)||(39150590-39150697)
chr1 (197-297)||(34409773-34409872)
chr1 (170-302)||(44829284-44829415)
chr1 (182-307)||(44329620-44329745)
chr1 (170-304)||(14746160-14746294)
chr1 (166-303)||(34232672-34232805)
chr1 (166-246)||(8794424-8794504)
chr1 (182-273)||(31889186-31889278)
chr1 (170-273)||(39156273-39156380)
chr1 (170-275)||(7212785-7212885)
chr1 (187-251)||(604444-604508)
chr1 (168-299)||(17552843-17552972)
chr1 (170-246)||(38491233-38491309)
chr1 (188-277)||(4851232-4851321)
chr1 (182-275)||(44329488-44329581)
chr1 (182-262)||(40460725-40460805)
chr1 (170-297)||(2994940-2995065)
chr1 (184-270)||(36563730-36563814)
chr1 (170-302)||(3982277-3982408)
chr1 (166-251)||(8365511-8365596)
chr1 (166-238)||(26811258-26811330)
[»] chr2 (18 HSPs)
chr2 (170-273)||(9448945-9449047)
chr2 (166-276)||(19890177-19890287)
chr2 (170-312)||(41933143-41933285)
chr2 (182-301)||(1334847-1334966)
chr2 (173-297)||(31452314-31452437)
chr2 (170-301)||(31017271-31017402)
chr2 (166-273)||(19514879-19514986)
chr2 (134-300)||(34904752-34904928)
chr2 (182-301)||(15505568-15505687)
chr2 (170-273)||(4762361-4762464)
chr2 (187-278)||(29239235-29239326)
chr2 (166-250)||(7673202-7673286)
chr2 (168-274)||(9173696-9173803)
chr2 (166-268)||(20064919-20065020)
chr2 (170-269)||(38533864-38533962)
chr2 (168-270)||(37993088-37993190)
chr2 (263-303)||(41551385-41551425)
chr2 (170-222)||(43228867-43228919)
[»] chr3 (15 HSPs)
chr3 (168-277)||(51351287-51351396)
chr3 (166-297)||(29083866-29083998)
chr3 (171-303)||(48180132-48180264)
chr3 (166-297)||(42845977-42846104)
chr3 (170-306)||(12086721-12086857)
chr3 (182-267)||(40673458-40673543)
chr3 (182-273)||(26900014-26900106)
chr3 (170-306)||(39551814-39551949)
chr3 (182-241)||(22730509-22730568)
chr3 (188-250)||(24791526-24791588)
chr3 (182-273)||(41309842-41309936)
chr3 (243-302)||(8957697-8957755)
chr3 (228-274)||(26143168-26143214)
chr3 (182-251)||(42939856-42939925)
chr3 (182-250)||(49362368-49362436)
[»] chr6 (19 HSPs)
chr6 (183-303)||(30801766-30801886)
chr6 (170-300)||(17215647-17215777)
chr6 (182-278)||(31855078-31855174)
chr6 (184-296)||(9762828-9762939)
chr6 (182-302)||(32823701-32823821)
chr6 (169-259)||(1840994-1841084)
chr6 (170-303)||(7421684-7421817)
chr6 (169-274)||(23399121-23399226)
chr6 (169-298)||(28874410-28874539)
chr6 (166-306)||(27778762-27778900)
chr6 (182-264)||(3766301-3766383)
chr6 (166-271)||(19293446-19293551)
chr6 (168-303)||(5446625-5446758)
chr6 (170-297)||(2864890-2865016)
chr6 (168-273)||(30739609-30739714)
chr6 (170-273)||(1479084-1479186)
chr6 (170-217)||(2692477-2692524)
chr6 (166-217)||(11720925-11720976)
chr6 (182-251)||(26669292-26669361)
[»] scaffold0036 (1 HSPs)
scaffold0036 (172-297)||(62492-62617)
[»] scaffold0268 (1 HSPs)
scaffold0268 (182-275)||(20238-20330)
[»] scaffold0419 (1 HSPs)
scaffold0419 (169-298)||(1076-1205)
[»] scaffold1444 (2 HSPs)
scaffold1444 (182-245)||(1723-1786)
scaffold1444 (166-246)||(950-1030)
[»] scaffold0119 (1 HSPs)
scaffold0119 (182-251)||(1432-1501)
[»] scaffold0003 (1 HSPs)
scaffold0003 (172-273)||(103640-103741)
[»] scaffold0004 (1 HSPs)
scaffold0004 (170-246)||(335866-335942)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 23 - 318
Target Start/End: Original strand, 7653441 - 7653736
Alignment:
Q  23 acattgtttgtgtagaagtgtaacatttttaaaagtaaggagcttagcatgcatttatatttttggcctaaatatttttaaaacatcaatagaaatgtat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653441 acattgtttgtgtagaagtgtaacatttttaaaagtaaggagcttagcatgcatttatatttttggcctaaatatttttaaaacatcaatagaaatgtat 7653540  T
Q  123 ccaattaaaacatgggtcttgttaacgagtgctctcggggcactcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcatt 222  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653541 ccaattaaaacatgggtcttgttaacgagtgctcccggggcactcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcatt 7653640  T
Q  223 cattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttccttaaaacattaattcttc 318  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653641 cattacacaacttttcattaaaaacttactttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttccttaaaacattaattcttc 7653736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 170 - 297
Target Start/End: Complemental strand, 35496667 - 35496540
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| ||||||  |||||||||||||||||||| ||||| |||| |||||||| ||||| ||||||||||||||||||| ||||||||| ||||||    
T  35496667 aaatttagtaactatatttttaaaaagtcaactattacaattttcaatgcattcattacacaatttttcattaaaaacttaccatttaaagtgtttaaag 35496568  T
Q  270 agtgtcccgggagaactcgttaacattt 297  Q
    |||| |||||| | ||||||||||||||    
T  35496567 agtgccccgggggcactcgttaacattt 35496540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 27123286 - 27123412
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| ||  |||||||||||||||||||||||| |||||||||| |||| | | ||||||||||| ||||||||||||| ||||||||||||||||    
T  27123286 aaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcattaagtacacaacttttcgttaaaaacttaccatttaaagtgcttaaag 27123385  T
Q  270 agtgtcccgggagaactcgttaacatt 296  Q
    |||| |||||| | |||||||||||||    
T  27123386 agtgccccgggggcactcgttaacatt 27123412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 28770501 - 28770621
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccggga 281  Q
    ||||||||| ||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||  |||| |||||||||||||||| ||||      
T  28770501 tattcttttgaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttactatttagagtgcttaaagagtgttccggag 28770600  T
Q  282 gaactcgttaacattttcctt 302  Q
    | |||||||||||||| ||||    
T  28770601 gcactcgttaacatttccctt 28770621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 172 - 304
Target Start/End: Original strand, 44537355 - 44537487
Alignment:
Q  172 atttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagag 271  Q
    |||||| || |||||||||||||||||||||||||||||||||| |  ||  | | || |||||||||||||||||||||  ||||||||||||||||||    
T  44537355 atttagtaattattcttttaaaaagtcaactattataatttccattgtatataatacataacttttcattaaaaacttactatttaaagtgcttaaagag 44537454  T
Q  272 tgtcccgggagaactcgttaacattttccttaa 304  Q
    || |||||| | |||||||||||||| ||||||    
T  44537455 tgccccgggggcactcgttaacatttcccttaa 44537487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 170 - 302
Target Start/End: Original strand, 35731299 - 35731430
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||| || | | | |||||||||| || || |||||||   |||||||||||||||    
T  35731299 aaatttaacaactattcttttaaaaagtcaactattacaatttccaatgcacttaatacacaactttttataaagaacttactaattaaagtgcttaaag 35731398  T
Q  270 agtgtcccgggagaactcgttaacattttcctt 302  Q
    |||| |||||| | |||||||||||||| ||||    
T  35731399 agtg-cccgggggcactcgttaacatttccctt 35731430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 297
Target Start/End: Complemental strand, 28663221 - 28663106
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccggga 281  Q
    ||||||||||||||||||||||||| ||||| |||| |||||| | ||||| |||||||||||| |||||  |||||||||||||||||||| |||||      
T  28663221 tattcttttaaaaagtcaactattacaattttcaatgcattcaatacacaatttttcattaaaaccttactatttaaagtgcttaaagagtgccccggag 28663122  T
Q  282 gaactcgttaacattt 297  Q
    | | ||||||||||||    
T  28663121 gcattcgttaacattt 28663106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 303
Target Start/End: Complemental strand, 21727499 - 21727367
Alignment:
Q  171 aatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaaga 270  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||| |||||| | ||||| | || |||||||||||| | ||| |||||||||||||    
T  21727499 aatttagtaattattcttttaaaaagtcaactattacaatttccaatacattcaatacacaaatatttattaaaaacttatcatttgaagtgcttaaaga 21727400  T
Q  271 gtgtcccgggagaactcgttaacattttcctta 303  Q
    ||| |||    | |||||||||||||| |||||    
T  21727399 gtgccccaaaggcactcgttaacatttccctta 21727367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 166 - 297
Target Start/End: Original strand, 43234798 - 43234928
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    ||||| |||||| || |||||||||||||| | |||||||| |||||||| | |||||| | || |||||||||||||||| ||||  ||||||||||||    
T  43234798 tcctatatttagtaattattcttttaaaaaataaactattacaatttccattacattcaatacataacttttcattaaaaatttactatttaaagtgctt 43234897  T
Q  266 aaagagtgtcccgggagaactcgttaacattt 297  Q
    |||||||| |||| | | ||||||||||||||    
T  43234898 aaagagtg-cccgagggcactcgttaacattt 43234928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 39321076 - 39320971
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||| ||||  ||||| | |||||||||| || ||||||||||   |||||||||||||||    
T  39321076 aaatttaacaattattcttttaaaaagtcaactattacaattttcaatgtattcaatacacaacttttaataaaaaacttactaattaaagtgcttaaag 39320977  T
Q  270 agtgtc 275  Q
    ||||||    
T  39320976 agtgtc 39320971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 25886181 - 25886288
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    ||||||||| || |||||| ||| |||||||||||||| ||||| |||| |||| | | |||||||||||||  |||||||||| ||||||||| |||||    
T  25886181 taaatttagaaattattctcttagaaagtcaactattacaattttcaatacatttaatacacaacttttcatataaaacttaccatttaaagtgtttaaa 25886280  T
Q  269 gagtgtcc 276  Q
    ||||||||    
T  25886281 gagtgtcc 25886288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 195 - 297
Target Start/End: Complemental strand, 14651459 - 14651357
Alignment:
Q  195 agtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaaca 294  Q
    |||||||| ||| |||||||||| || ||||| |||||||||||||||||||| |||  ||| |||||||||||||||| |||| | | |||||||||||    
T  14651459 agtcaactgttacaatttccaatgcaatcattacacaacttttcattaaaaacctactattttaagtgcttaaagagtgccccgagggcactcgttaaca 14651360  T
Q  295 ttt 297  Q
    |||    
T  14651359 ttt 14651357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 3692889 - 3693017
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcat-taaaaacttaccttttaaagtgcttaaa 268  Q
    ||||||||||| |||||||||||||| |||||||||| |||||||||| || ||| | ||||| |||||||  ||||||||||   ||||| | ||||||    
T  3692889 aaatttagcaattattcttttaaaaaatcaactattacaatttccaatgcactcaatacacaatttttcataaaaaaacttactaattaaaatacttaaa 3692988  T
Q  269 gagtgtcccgggagaactcgttaacattt 297  Q
    ||||| ||||| |  ||||||||||||||    
T  3692989 gagtgccccggaaacactcgttaacattt 3693017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 43224169 - 43224072
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgg 279  Q
    ||||||||||||||||||||| ||| ||||||||||  ||  | | |||||||||||||||||||||| |  ||||||||||||||||| || |||||    
T  43224169 tattcttttaaaaagtcaactgttacaatttccaatgtatgtaatacacaacttttcattaaaaacttgctatttaaagtgcttaaagaatgccccgg 43224072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 26239637 - 26239533
Alignment:
Q  168 ctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    ||||||||||||| |||||||| ||||||| |||  ||||| |||||||| |||| | |  |||| ||||||||||||||||||  ||||||||| ||||    
T  26239637 ctaaatttagcaattattctttcaaaaagttaacgtttatagtttccaatgcattgaatatacaatttttcattaaaaacttactatttaaagtgtttaa 26239538  T
Q  268 agagt 272  Q
    |||||    
T  26239537 agagt 26239533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 34117953 - 34117859
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcc 276  Q
    |||| ||||| ||||||||||||||  ||||||||| | || |||  |||| |||| |||||||||||| | |||||| ||||||||||||||||    
T  34117953 tattattttagaaagtcaactattacgatttccaatgcgttaattatacaattttttattaaaaacttatcatttaaaatgcttaaagagtgtcc 34117859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 9719059 - 9718983
Alignment:
Q  199 aactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtc 275  Q
    |||| ||| ||||| ||||  ||||||| || ||||||||||  |||||||||| ||||||||||||||||||||||    
T  9719059 aactgttacaattttcaatgtattcattacataacttttcatataaaacttaccatttaaagtgcttaaagagtgtc 9718983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 297
Target Start/End: Complemental strand, 35923585 - 35923474
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccggga 281  Q
    ||||||||| |||| | |||||||| |||||||||| |||||| |    ||||||||| ||||||||||   ||||||||| ||||||||||| || |||    
T  35923585 tattctttttaaaaataaactattacaatttccaatgcattcaat----aacttttcaataaaaacttattatttaaagtgtttaaagagtgttcc-gga 35923491  T
Q  282 ga-actcgttaacattt 297  Q
    || ||||||||||||||    
T  35923490 gacactcgttaacattt 35923474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 302
Target Start/End: Complemental strand, 8920759 - 8920665
Alignment:
Q  208 aatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttcctt 302  Q
    |||||||||| |||| ||| || |||||||||  ||||| |||||||||||||  ||||||||||| ||| ||   |||||||||||||| ||||    
T  8920759 aatttccaatgcattgattacataacttttcaaaaaaaaattaccttttaaaggtcttaaagagtgccccagggccactcgttaacatttccctt 8920665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 10200593 - 10200685
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtc 275  Q
    ||||||||||||||||||||  ||| |||||| ||| |||| | | || ||||||  || ||||||||| | ||||||||||||||||||||||    
T  10200593 tattcttttaaaaagtcaaccgttacaatttcaaatgcattaaatacataactttctat-aaaaacttatcatttaaagtgcttaaagagtgtc 10200685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 27337709 - 27337790
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttac 251  Q
    ||||||| ||| |||||||| ||||| |||||||||| | ||| |||| |||| | | ||||||||||||| ||||||||||    
T  27337709 aaatttaacaattattctttaaaaaaatcaactattacagtttacaatacattaaatacacaacttttcataaaaaacttac 27337790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 40754041 - 40753938
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    ||||||||  || |||| ||| ||||| |||||||||| | |||| ||| |||| | | ||||||||||||||||||||||| | |||||| || |||||    
T  40754041 taaatttaataattattttttaaaaaaatcaactattacattttc-aatacatttaatacacaacttttcattaaaaacttatcatttaaaatgtttaaa 40753943  T
Q  269 gagtg 273  Q
    |||||    
T  40753942 gagtg 40753938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 48488211 - 48488172
Alignment:
Q  231 aacttttcattaaaaacttaccttttaaagtgcttaaaga 270  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  48488211 aacttttcattaaaaacttatcatttaaagtgcttaaaga 48488172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 18801052 - 18801122
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcat 240  Q
    ||||||||||| || |||||| ||||||||||||||| ||||| |||| || | | | |||||||||||||    
T  18801052 aaatttagcaattactcttttcaaaagtcaactattacaattttcaatacaatgaatacacaacttttcat 18801122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 7968654 - 7968617
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactatta 206  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  7968654 taaatttagcaattattcttttaaaaaatcaactatta 7968617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 29711588 - 29711463
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    ||||||||| || | |||||||||||| ||||| |||||||||| ||||  ||||||| || || |||| ||  |||| ||| | ||| ||||| |||||    
T  29711588 taaatttagaaatttttcttttaaaaaatcaacaattataattttcaatgtattcattacataattttttatataaaatttatcattttaagtgtttaaa 29711489  T
Q  269 gagtgtcccgggagaactcgttaaca 294  Q
     ||||  |||| || |||||||||||    
T  29711488 tagtgatccggaagcactcgttaaca 29711463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 17157791 - 17157731
Alignment:
Q  242 aaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttcctt 302  Q
    ||||| |||||||||||||  ||||||||||| | |||| | |||||||||||||| ||||    
T  17157791 aaaaagttaccttttaaaggtcttaaagagtgcctcgggggcactcgttaacatttccctt 17157731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 166 - 297
Target Start/End: Original strand, 51834922 - 51835053
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||||||| ||||  ||||||||| ||    
T  51834922 tcctaaatttagcaattattcttttaaaaagtcaactattataatttccaatgcattaaatacacaacttttcattaaaaatttactatttaaagtgttt 51835021  T
Q  266 aaagagtgtcccgggagaactcgttaacattt 297  Q
    |||||||||| |||||  ||||||||||||||    
T  51835022 aaagagtgtctcgggaacactcgttaacattt 51835053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 170 - 297
Target Start/End: Complemental strand, 37138256 - 37138129
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||||||| || ||||| |   ||||| |||||||||    
T  37138256 aaatttagcaactattcttttaaaaagtcaactattataatttccaatgcactcaatacacaacttttcataaagaactttctaattaaattgcttaaag 37138157  T
Q  270 agtgtcccgggagaactcgttaacattt 297  Q
    |||||||||| || ||||||||||||||    
T  37138156 agtgtcccggaagcactcgttaacattt 37138129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 35777793 - 35777693
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||||||||||||||| |||||||| |||||| ||| |||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  35777793 aaatttagtaattattcttttaaaaagttaactattacaatttctaatgcattcaatacacaacttttcattaaaaacttaccatttaaagtgcttaaag 35777694  T
Q  270 a 270  Q
    |    
T  35777693 a 35777693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 302
Target Start/End: Complemental strand, 45900247 - 45900111
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    ||||||||||||||| |||||||||| |||||||||||| | |||||||||| |||||| | |||||||||||||   ||||||||   |||||||||||    
T  45900247 tcctaaatttagcaattattcttttataaagtcaactatcacaatttccaatgcattcaatacacaacttttcatatgaaacttactaattaaagtgctt 45900148  T
Q  266 aaagagtgtcccgggagaactcgttaacattttcctt 302  Q
    |||||||| ||| || | |||||||||||||| ||||    
T  45900147 aaagagtgcccccggggcactcgttaacatttccctt 45900111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 166 - 297
Target Start/End: Complemental strand, 7852642 - 7852511
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    |||||||||||| || |||||||||||||| | |||||||| ||||| |||| |||| | | ||||||||||||||||||||||||  ||||||||||||    
T  7852642 tcctaaatttagtaattattcttttaaaaaattaactattacaattttcaatgcatttaatacacaacttttcattaaaaacttactatttaaagtgctt 7852543  T
Q  266 aaagagtgtcccgggagaactcgttaacattt 297  Q
    |||||||| |||||  | ||||||||| ||||    
T  7852542 aaagagtgccccggtggcactcgttaatattt 7852511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 170 - 304
Target Start/End: Original strand, 50427001 - 50427135
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || ||||||||| ||||||||||||||| |||||||||| || |||   ||||||||||||||||||| ||||  ||||||||| ||||||    
T  50427001 aaatttagtaattattcttttgaaaagtcaactattacaatttccaatgcaatcaacacacaacttttcattaaaaatttactatttaaagtgtttaaag 50427100  T
Q  270 agtgtcccgggagaactcgttaacattttccttaa 304  Q
    |||| | | || | |||||||||||||||||||||    
T  50427101 agtgccacaggggcactcgttaacattttccttaa 50427135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 170 - 297
Target Start/End: Complemental strand, 7444480 - 7444352
Alignment:
Q  170 aaatttagcaactattcttttaaaaa-gtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    |||||||| || ||| |||||||||| ||||||||||| ||||| |||| |||||| | ||||||||||| |||||||||||   ||||||||| |||||    
T  7444480 aaatttagtaattatacttttaaaaaagtcaactattacaattttcaatgcattcaatacacaacttttctttaaaaacttagtatttaaagtgtttaaa 7444381  T
Q  269 gagtgtcccgggagaactcgttaacattt 297  Q
    ||||||| |||||| ||||||||||||||    
T  7444380 gagtgtctcgggagcactcgttaacattt 7444352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 8297883 - 8297992
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || ||||||||||||| ||||||| ||| |||||||||| |||||| | ||||| ||||||||||||||||||  ||||||||||||||||    
T  8297883 aaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcattcaatacacaatttttcattaaaaacttactatttaaagtgcttaaag 8297982  T
Q  270 agtgtcccgg 279  Q
    | || |||||    
T  8297983 attgccccgg 8297992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 36702814 - 36702919
Alignment:
Q  188 tttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactc 287  Q
    ||||||||||||| ||||| ||||| |||| |||||| | ||||| |||||||||||||||||    |||||||||||||||||||||||||  ||||||    
T  36702814 tttaaaaagtcaattattacaattttcaatgcattcaatacacaatttttcattaaaaactta----ttaaagtgcttaaagagtgtcccggaggaactc 36702909  T
Q  288 gttaacattt 297  Q
    ||||||||||    
T  36702910 gttaacattt 36702919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 304
Target Start/End: Complemental strand, 47995833 - 47995697
Alignment:
Q  168 ctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    |||||||||| || || ||||||||||||| || ||||| ||||| |||| |||||| | || |||||||||||||||||||||  ||||||||||||||    
T  47995833 ctaaatttagtaattactcttttaaaaagttaattattacaattttcaatgcattcaatacataacttttcattaaaaacttacaatttaaagtgcttaa 47995734  T
Q  268 agagtgtcccgggagaactcgttaacattttccttaa 304  Q
    |||| ||| | ||   ||| |||||||||||||||||    
T  47995733 agagagtctcagggacacttgttaacattttccttaa 47995697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 50341961 - 50341859
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || ||||||||||||||||||||||||| |||||||||  |||||| | |||||||||||||| |||| ||||  | ||||||||||||||    
T  50341961 aaatttagtaattattcttttaaaaagtcaactattacaatttccaacgcattcaatacacaacttttcatttaaaatttactatataaagtgcttaaag 50341862  T
Q  270 agt 272  Q
    |||    
T  50341861 agt 50341859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 297
Target Start/End: Original strand, 31429301 - 31429416
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccggga 281  Q
    |||||||||||||| |||||||||| |||||||||| |||||| | |||||||||||||| |||||||||   |||||||||||||| | ||||  || |    
T  31429301 tattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttcatttaaaacttactaattaaagtgcttaaaaaatgtcatggaa 31429400  T
Q  282 gaactcgttaacattt 297  Q
    | ||||| ||||||||    
T  31429401 gcactcgataacattt 31429416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 170 - 300
Target Start/End: Complemental strand, 24229740 - 24229610
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || ||||||||| |||||| || ||| | ||||| |||| |||| | | ||||| ||||||||||||||||    ||||||||||||||||    
T  24229740 aaatttagtaattattctttttaaaagtaaattatcacaattttcaatgcatttaatacacaatttttcattaaaaactttttatttaaagtgcttaaag 24229641  T
Q  270 agtgtcccgggagaactcgttaacattttcc 300  Q
    |||||| |||||| || ||||||||||||||    
T  24229640 agtgtctcgggagcacccgttaacattttcc 24229610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 168 - 306
Target Start/End: Original strand, 37440836 - 37440974
Alignment:
Q  168 ctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    |||||||||| || |||| |||||||||||||||||||| ||||| ||||   |||| | || || ||||||||| ||| ||||| |||||||| |||||    
T  37440836 ctaaatttagtaattattattttaaaaagtcaactattacaattttcaatgtgttcaatacataatttttcattataaatttaccatttaaagtacttaa 37440935  T
Q  268 agagtgtcccgggagaactcgttaacattttccttaaaa 306  Q
    |||||||| |  | | |||||||||||||| ||||||||    
T  37440936 agagtgtctcaagggcactcgttaacatttcccttaaaa 37440974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 166 - 312
Target Start/End: Complemental strand, 53014304 - 53014158
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    |||||||||||| || |||  ||||||||| | |||||||| |||||||||| |||||| | |||||||||| ||||||||| |||| ||||||||||||    
T  53014304 tcctaaatttagtaattatctttttaaaaaattaactattacaatttccaatacattcaatacacaactttttattaaaaacataccatttaaagtgctt 53014205  T
Q  266 aaagagtgtcccgggagaactcgttaacattttccttaaaacattaa 312  Q
    || || | |||||   | |||| ||||||||||| | || |||||||    
T  53014204 aacgaatttcccgaaggcactcattaacattttcttaaagacattaa 53014158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 303
Target Start/End: Complemental strand, 31174733 - 31174612
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccggga 281  Q
    |||||||||||||||| |||| ||| ||||| ||||  ||||||| ||||||||||||||||||| ||| | ||||||||  ||||||| | |||| | |    
T  31174733 tattcttttaaaaagttaactgttacaattttcaatatattcattacacaacttttcattaaaaatttatcatttaaagtatttaaagaatatcccagaa 31174634  T
Q  282 gaactcgttaacattttcctta 303  Q
    | |||||||||||||| |||||    
T  31174633 gcactcgttaacatttccctta 31174612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 49084499 - 49084412
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaat-tcattcattgcacaacttttcattaaaaacttacc 252  Q
    |||||||||||| || ||||||||||||||||||||||||| ||||| ||||   ||||| | |||||||||||||||||||||||||    
T  49084499 tcctaaatttagtaattattcttttaaaaagtcaactattacaattttcaatgaaattcaatacacaacttttcattaaaaacttacc 49084412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 170 - 300
Target Start/End: Complemental strand, 34391801 - 34391671
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||||||||| |||||||  ||||| |||||||||| || ||| | |||||||||| |||||||||||||  ||| ||||| ||||||    
T  34391801 aaatttagtaattattcttttataaagtcagttattacaatttccaatgcaatcaatacacaactttttattaaaaacttactattttaagtgtttaaag 34391702  T
Q  270 agtgtcccgggagaactcgttaacattttcc 300  Q
    |||  | ||  || |||||||||||||||||    
T  34391701 agtacctcgaaagtactcgttaacattttcc 34391671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 41462063 - 41462164
Alignment:
Q  172 atttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagag 271  Q
    |||||| || ||||||||||||||||||||||||| ||||||  || |||| | | || || ||||||||||||||||||  |||||| |||||||||||    
T  41462063 atttagtaattattcttttaaaaagtcaactattacaatttcttatgcatttaatacataatttttcattaaaaacttactatttaaaatgcttaaagag 41462162  T
Q  272 tg 273  Q
    ||    
T  41462163 tg 41462164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 24175496 - 24175385
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    |||||||||||| || ||||||||||||| || |||||||| |||||  ||| |||| | | ||||||||||| |  |||||||||| ||||||||||||    
T  24175496 tcctaaatttagtaaatattcttttaaaa-gtaaactattacaattttaaatgcatttaatacacaacttttcgtacaaaacttaccatttaaagtgctt 24175398  T
Q  266 aaagagtgtcccg 278  Q
    |||||||| ||||    
T  24175397 aaagagtgccccg 24175385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 51736366 - 51736433
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaactttt 237  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||| |||| | | ||||||||||    
T  51736366 aaatttagcaattattcttttaaaaagtcaactattataattttcaatacattgaatacacaactttt 51736433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 23605703 - 23605634
Alignment:
Q  228 cacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggaga-actcgttaacattt 297  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||||| ||||||||||||||    
T  23605703 cacaacttttcattaaaaacttaccatttaaagtgcttaaaaagtatccc-ggagacactcgttaacattt 23605634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 42222967 - 42223069
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| |||||||  ||||||||  ||||||||||||||| |||| |||||| | ||||| |||| ||||||||||||||  || |||| |||||||    
T  42222967 aaatttagtaactatttatttaaaaaaccaactattataattttcaatgcattcaatacacaattttttattaaaaacttaccactttaagtacttaaag 42223066  T
Q  270 agt 272  Q
    |||    
T  42223067 agt 42223069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 272
Target Start/End: Original strand, 49400620 - 49400726
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    |||||||||||| || |||||||||||||| |||||||||| ||||||||||  ||| | | ||| ||||||||||||||  ||    ||||||||||||    
T  49400620 tcctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgtatttaatacacgacttttcattaaaattttgttatttaaagtgctt 49400719  T
Q  266 aaagagt 272  Q
    |||||||    
T  49400720 aaagagt 49400726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 8261139 - 8261247
Alignment:
Q  189 ttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggaga-actc 287  Q
    |||||||||||||| ||| ||||| |||| |||| | | || |||||||||||||||||||||  |||||||||||| ||||||| |||  |||| ||||    
T  8261139 ttaaaaagtcaactgttacaattttcaatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtg-ccccagagacactc 8261237  T
Q  288 gttaacattt 297  Q
    ||||||||||    
T  8261238 gttaacattt 8261247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 8274556 - 8274664
Alignment:
Q  189 ttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggaga-actc 287  Q
    |||||||||||||| ||| ||||| |||| |||| | | || |||||||||||||||||||||  |||||||||||| ||||||| |||  |||| ||||    
T  8274556 ttaaaaagtcaactgttacaattttcaatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtg-ccccagagacactc 8274654  T
Q  288 gttaacattt 297  Q
    ||||||||||    
T  8274655 gttaacattt 8274664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 27953123 - 27953046
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaa 259  Q
    |||| ||||||||||| |||||||| ||||| |||| |||||| | ||||||||||| ||||||||||||| ||||||    
T  27953123 tattattttaaaaagttaactattacaattttcaatgcattcaatacacaacttttcgttaaaaacttaccatttaaa 27953046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 20394650 - 20394750
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaac-ttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    |||||||| || |||||||||||||||| |||||||| |||||||||| |||||| |  ||||| |||||||||||||||| || |||||| || |||||    
T  20394650 aaatttagtaattattcttttaaaaagtgaactattacaatttccaatacattcaat--acaacattttcattaaaaactt-ccatttaaaatgtttaaa 20394746  T
Q  269 gagt 272  Q
    ||||    
T  20394747 gagt 20394750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 13585326 - 13585250
Alignment:
Q  199 aactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtc 275  Q
    |||| ||| ||||| ||||  ||||||| || ||||||||||  |||||||||| ||||||||||||||||||||||    
T  13585326 aactgttacaattttcaatgtattcattacataacttttcatataaaacttaccatttaaagtgcttaaagagtgtc 13585250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 302
Target Start/End: Original strand, 7628009 - 7628102
Alignment:
Q  208 aatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttcctt 302  Q
    |||||||||| ||||  || || |||||||||  ||||| |||||||||||||  ||||||||||| |||||| | |||||||||||||| ||||    
T  7628009 aatttccaatacattggttacataacttttcaa-aaaaagttaccttttaaaggtcttaaagagtgccccgggggcactcgttaacatttccctt 7628102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 25115357 - 25115260
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    |||||||| || |||| ||||||||||| |||||||| |||||||||| || | | | |||||||||| | |||||||||||  ||||||||| |||||    
T  25115357 aaatttagtaattattattttaaaaagttaactattacaatttccaatgcagtgaatacacaacttttta-taaaaacttactatttaaagtgtttaaa 25115260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 37060625 - 37060667
Alignment:
Q  234 ttttcattaaaaacttaccttttaaagtgcttaaagagtgtcc 276  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  37060625 ttttcattaaaaacttaccatttaaagtgcttaaaaagtgtcc 37060667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 12618788 - 12618681
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||| |||||||||||||| | |||||| || |||| |||| |||  |||| |||||| |||||||||| |||| || ||| ||||||    
T  12618788 aaatttagaaattatttttttaaaaagtcaaatgttataaatttcaatgcattgattatacaaattttca-taaaaacttaactttaaaggtgtttaaag 12618690  T
Q  270 agtgtcccg 278  Q
    |||| ||||    
T  12618689 agtgccccg 12618681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 14031333 - 14031282
Alignment:
Q  243 aaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaaca 294  Q
    |||||||||| ||||||||||||||||||||  ||||| | |||||||||||    
T  14031333 aaaacttaccgtttaaagtgcttaaagagtgcaccgggtgcactcgttaaca 14031282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 23504749 - 23504795
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataattt 212  Q
    |||||||||||| || |||||||||||||| |||||||||| |||||    
T  23504749 tcctaaatttagaaattattcttttaaaaaatcaactattaaaattt 23504795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 24396249 - 24396303
Alignment:
Q  221 ttcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtc 275  Q
    |||||| || ||||||||||  |||||||||| |||||||| |||||||||||||    
T  24396249 ttcattacataacttttcatataaaacttaccatttaaagtacttaaagagtgtc 24396303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 31690412 - 31690520
Alignment:
Q  188 tttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactc 287  Q
    ||||||||||||||| ||  ||||| |||| |||| | | ||||||||||||| | ||| ||||  ||||||||| |||| |||||| ||| | | ||||    
T  31690412 tttaaaaagtcaactgttgcaattttcaatgcattgaatacacaacttttcataagaaatttactatttaaagtgtttaaggagtgt-ccgagggcactc 31690510  T
Q  288 gttaacattt 297  Q
    ||||||||||    
T  31690511 gttaacattt 31690520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 23606022 - 23605974
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaat 217  Q
    ||||||||| || |||||||||||||||| || ||||| ||||||||||    
T  23606022 taaatttagtaattattcttttaaaaagttaattattacaatttccaat 23605974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 33559158 - 33559098
Alignment:
Q  242 aaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttcctt 302  Q
    ||||| |||||||||||||   ||||||||||| ||  ||| |||||||||||||||||||    
T  33559158 aaaaaattaccttttaaaggttttaaagagtgttccaagagcactcgttaacattttcctt 33559098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 170 - 302
Target Start/End: Complemental strand, 18229696 - 18229564
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||||||||||||||| |||||||| |||||||||| |||||| |  |||| ||||||||||||||||||| ||||||||||||||||    
T  18229696 aaatttagtaattattcttttaaaaagttaactattacaatttccaatacattcaataaacaatttttcattaaaaacttaccatttaaagtgcttaaag 18229597  T
Q  270 agtgtcccgggagaactcgttaacattttcctt 302  Q
    |||||||||| || |||||||||||||| ||||    
T  18229596 agtgtcccggaagcactcgttaacatttccctt 18229564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 30104816 - 30104943
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| ||||||| ||||||||||||||| |||| |||||||||| |||||| | |||||||||||||||||||||||||  |||||||| ||||||    
T  30104816 aaatttagtaactatttttttaaaaagtcaacaattacaatttccaatgcattcaatacacaacttttcattaaaaacttaccacttaaagtgtttaaag 30104915  T
Q  270 agtgtcccgggagaactcgttaacattt 297  Q
    ||||  ||||| | ||| ||||||||||    
T  30104916 agtgctccgggggcactagttaacattt 30104943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 306
Target Start/End: Complemental strand, 30501234 - 30501097
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || ||||||||||||||||||| ||||| |||||||||| |||||| | |||||||||||||| |||||||||  ||||||||||||||      
T  30501234 aaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttactatttaaagtgcttaaca 30501135  T
Q  270 agtgtccc-gggagaactcgttaacattttccttaaaa 306  Q
    |||| ||| ||| | |||||||||||||| || |||||    
T  30501134 agtgccccggggggcactcgttaacatttcccataaaa 30501097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 306
Target Start/End: Complemental strand, 30541577 - 30541440
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || ||||||||||||||||||| ||||| |||||||||| |||||| | |||||||||||||| |||||||||  ||||||||||||||      
T  30541577 aaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttactatttaaagtgcttaaca 30541478  T
Q  270 agtgtccc-gggagaactcgttaacattttccttaaaa 306  Q
    |||| ||| ||| | |||||||||||||| || |||||    
T  30541477 agtgccccggggggcactcgttaacatttcccataaaa 30541440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 271
Target Start/End: Complemental strand, 9276674 - 9276573
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||| ||||||||| |||||||||||||||| |||| |||||| | || |||||||||||||||||||||  ||||||||||||||||    
T  9276674 aaatttagtaattatttttttaaaaaatcaactattataattttcaatgcattcaatacataacttttcattaaaaacttactatttaaagtgcttaaag 9276575  T
Q  270 ag 271  Q
    ||    
T  9276574 ag 9276573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 16667374 - 16667282
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgt 274  Q
    ||||||||||||||||||| ||||| |||||||||| |||||| | ||||| ||||||||||||||||||  ||||||||||||||| |||||    
T  16667374 tattcttttaaaaagtcaattattacaatttccaatacattcaatacacaatttttcattaaaaacttactatttaaagtgcttaaaaagtgt 16667282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 169 - 300
Target Start/End: Original strand, 3140825 - 3140956
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    ||||||||  || ||||||||||||||||||||||||| ||||| ||||||||| | |  ||||||||| ||| ||||||||   ||||||||| |||||    
T  3140825 taaatttaataattattcttttaaaaagtcaactattacaattttcaattcatttaatatacaactttttatttaaaacttattatttaaagtgtttaaa 3140924  T
Q  269 gagtgtcccgggagaactcgttaacattttcc 300  Q
    | |||||||||||  |||| ||||||||||||    
T  3140925 gtgtgtcccgggaacactcattaacattttcc 3140956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 168 - 306
Target Start/End: Original strand, 8221132 - 8221270
Alignment:
Q  168 ctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    ||||||||||||| |||||| |||||||||||||||||| || || |||| |||||| | ||||| |||| |||||||||||||  |||||| |||||||    
T  8221132 ctaaatttagcaattattctcttaaaaagtcaactattacaactttcaatgcattcaatacacaattttttattaaaaacttactatttaaaatgcttaa 8221231  T
Q  268 agagtgtcccgggaga-actcgttaacattttccttaaaa 306  Q
    ||| || | | ||||| |||| ||||||||||||||||||    
T  8221232 agaatg-ctccggagacactcattaacattttccttaaaa 8221270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 7719228 - 7719322
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcc 276  Q
    |||||||||||||| |||||||||| ||||||||||  ||||| | |||||||||||||||||||||||   ||||||||||||||| |||||||    
T  7719228 tattcttttaaaaaatcaactattacaatttccaatatattcaatacacaacttttcattaaaaacttattatttaaagtgcttaaaaagtgtcc 7719322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 297
Target Start/End: Original strand, 17692270 - 17692400
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    |||||||||||| || |||||| |||||||||||||| ||| ||||| |||| || | | | |||||||||||||||||||| |||  ||| ||||||||    
T  17692270 tcctaaatttagtaattattctcttaaaaagtcaactgttacaattttcaatgcaattactacacaacttttcattaaaaacctactattttaagtgctt 17692369  T
Q  266 aaagagtgtcccgggagaactcgttaacattt 297  Q
    |||||||  |||||| | ||||||||||||||    
T  17692370 aaagagt-acccgggggcactcgttaacattt 17692400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 300
Target Start/End: Original strand, 41047997 - 41048128
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    |||||||||||| |||| |||||||| || || |||||||||||||||| |||| | ||||||  |||||||||||||||  || ||| |||| ||||||    
T  41047997 taaatttagcaattatttttttaaaaggttaattattataatttccaatgcattaaatgcacactttttcattaaaaactacccattttaagtacttaaa 41048096  T
Q  269 gagtgtcccgggagaactcgttaacattttcc 300  Q
    |||| ||| ||  | || ||||||||||||||    
T  41048097 gagtatcctggaggcacccgttaacattttcc 41048128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 306
Target Start/End: Complemental strand, 112581 - 112444
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    |||| |||| || ||||||||| |||||||||||  || ||||| ||||  ||| | | ||||| ||||||||||||| ||    |||||||||||||||    
T  112581 taaaattagtaattattcttttgaaaagtcaactgatacaattttcaatgtatttaatacacaatttttcattaaaaatttgttatttaaagtgcttaaa 112482  T
Q  269 gagtgtcccgggagaactcgttaacattttccttaaaa 306  Q
    ||||||||| || | ||||||||||| |||||||||||    
T  112481 gagtgtccccggggcactcgttaacagtttccttaaaa 112444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 274
Target Start/End: Original strand, 15720079 - 15720183
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||||  | | | | ||||||||||||| || |||||||   |||||||| ||||||    
T  15720079 aaatttatcaattattcttttaaaaagtcaactattacaatttccaatgaacttaatacacaacttttcataaagaacttactaattaaagtgtttaaag 15720178  T
Q  270 agtgt 274  Q
    |||||    
T  15720179 agtgt 15720183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 182 - 297
Target Start/End: Original strand, 8208203 - 8208318
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccggga 281  Q
    ||||||||||||||||||| ||||| |||||  ||| |||||||| || ||||||||||  |||||||| | ||||| ||| |||||||||   |||| |    
T  8208203 tattcttttaaaaagtcaattattacaatttttaatgcattcattacataacttttcatataaaacttatcatttaatgtgtttaaagagtactccggaa 8208302  T
Q  282 gaactcgttaacattt 297  Q
    | ||||||||||||||    
T  8208303 gcactcgttaacattt 8208318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 2918675 - 2918587
Alignment:
Q  187 ttttaaaaa-gtcaactattataatttccaattcattcattgcacaacttttcattaaaaa-cttaccttttaaagtgcttaaagagtg 273  Q
    ||||||||| |||||||||||||||||||||| |||| | | |||||||||||||||||||  ||||  |||||| |||||||||||||    
T  2918675 ttttaaaaatgtcaactattataatttccaatgcatttaatacacaacttttcattaaaaattttacaatttaaaatgcttaaagagtg 2918587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 34899218 - 34899099
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccggga 281  Q
    ||||||||||||||| ||| ||||| |||||| ||| |||| | |  | ||||||||||| |||||||||  ||||||||| |||||||||| ||| ||     
T  34899218 tattcttttaaaaagacaattattacaatttctaatgcatttaatatataacttttcatttaaaacttactatttaaagtgtttaaagagtg-ccctggt 34899120  T
Q  282 gaactcgttaacattttcctt 302  Q
    | |||||||||||||| ||||    
T  34899119 gcactcgttaacatttccctt 34899099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 7968460 - 7968511
Alignment:
Q  228 cacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgg 279  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  7968460 cacaacttttcattaaaaacttactatttaaagtgcttaaagagtgccccgg 7968511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 40530527 - 40530448
Alignment:
Q  172 atttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttac 251  Q
    |||||| || |||| ||||||||||| |||||| | |||||| |||||||||| | ||||||| ||||||||||||||||    
T  40530527 atttagtaattattattttaaaaagttaactatcacaatttctaattcattcaatacacaactattcattaaaaacttac 40530448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 299
Target Start/End: Complemental strand, 5815166 - 5815036
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    ||||||||| || ||||| |||||||| | |||||  | |||||||||| ||||||    ||| |||||||||||||||||||   || |||||||||||    
T  5815166 taaatttagtaattattcatttaaaaatttaactaccacaatttccaatacattcaacatacatcttttcattaaaaacttactgctttaagtgcttaaa 5815067  T
Q  269 gagtgtcccgggagaactcgttaacattttc 299  Q
    ||||| |||   || ||||||||||||||||    
T  5815066 gagtgccccaaaagcactcgttaacattttc 5815036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 13480060 - 13480159
Alignment:
Q  199 aactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtc-ccgggagaactcgttaacattt 297  Q
    |||||||||||||| |||| |||||| | |||||  ||| |||||||| |||   ||||||||| |||||||||||| |||| | |||| ||||||||||    
T  13480060 aactattataattttcaatgcattcaatacacaatattttattaaaaatttattatttaaagtggttaaagagtgtcaccggaaaaacttgttaacattt 13480159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 31672495 - 31672550
Alignment:
Q  242 aaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattt 297  Q
    ||||| |||||||||||||  ||||||||||| |||||| | ||||||||||||||    
T  31672495 aaaaagttaccttttaaaggtcttaaagagtgccccgggggcactcgttaacattt 31672550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 39558859 - 39558764
Alignment:
Q  172 atttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    |||||| || ||||| |||||||| |||||| ||| |||||||||| ||||   | ||| |||||||| |||||||||||  |||||| |||||||    
T  39558859 atttagtaattattcatttaaaaattcaactgttacaatttccaatgcatttgatacacgacttttcaataaaaacttactatttaaaatgcttaa 39558764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 5758644 - 5758709
Alignment:
Q  241 taaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttccttaaaa 306  Q
    |||||||||||| |||||||| |||||| |||| |||||| | ||||||||  |||| ||||||||    
T  5758644 taaaaacttaccatttaaagtccttaaaaagtgccccgggggcactcgttagtatttcccttaaaa 5758709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 23117321 - 23117221
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    |||||||||||  ||||||||| ||| || ||| |||| |||||||||| |||| | | || || ||||||||||||||||||  |||||| || |||||    
T  23117321 taaatttagcagttattctttttaaa-gttaacaattacaatttccaatacatttaatacataatttttcattaaaaacttactatttaaaatgattaaa 23117223  T
Q  269 ga 270  Q
    ||    
T  23117222 ga 23117221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 29342401 - 29342462
Alignment:
Q  242 aaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttcctta 303  Q
    ||||| |||||||||||||  |||||| |||| |||||| | |||||||||||||| |||||    
T  29342401 aaaaagttaccttttaaaggtcttaaaaagtgccccgggggcactcgttaacatttccctta 29342462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 27801322 - 27801187
Alignment:
Q  168 ctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    |||||||||| || ||||||||||||||||||||||||| ||||| |||| |||||||| |||||||||| |||||||||||||  ||||||||||||||    
T  27801322 ctaaatttagtaattattcttttaaaaagtcaactattacaattttcaatgcattcattacacaactttttattaaaaacttactatttaaagtgcttaa 27801223  T
Q  268 agagtgtcccgggagaactcgttaacattttcctta 303  Q
    |||||  |||  ||| |||||||||||||| |||||    
T  27801222 agagtaccccaagagcactcgttaacatttccctta 27801187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 4384232 - 4384094
Alignment:
Q  167 cctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctta 266  Q
    ||||||||||| || |||||||||||||| |||||||||| |||||||||| |||||| | |||||| |||||||||||| ||| | |||||||||||||    
T  4384232 cctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaatttatcatttaaagtgctta 4384134  T
Q  267 aagagtgtcccgggagaactcgttaacattttccttaaaa 306  Q
    |||||||||||| ||  |||||||||| ||| ||| ||||    
T  4384133 aagagtgtcccgagaacactcgttaacgtttccctaaaaa 4384094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 297
Target Start/End: Complemental strand, 42636460 - 42636333
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||| ||  |||||||||||||||| ||||| |||| |||| | | ||||||||||||||||||||||||| ||||||||||||||||    
T  42636460 aaatttagtaattattattcaaaaaagtcaactattacaatttacaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtgcttaaag 42636361  T
Q  270 agtgtcccgggagaactcgttaacattt 297  Q
    ||||  ||||||| ||||||||||||||    
T  42636360 agtgctccgggagcactcgttaacattt 42636333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 304
Target Start/End: Original strand, 28207636 - 28207770
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaa-gtgcttaaa 268  Q
    ||||||| |||  |||||||||||||||||||||||| |||||||||| |||||| | |||||||||||||||||||||| || |||||| |||||||||    
T  28207636 aaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaactttccatttaaaggtgcttaaa 28207735  T
Q  269 gagtgtcccgggagaactcgttaacattttccttaa 304  Q
    ||||||   ||||  |||||||||||||| ||||||    
T  28207736 gagtgtaagggga-tactcgttaacatttcccttaa 28207770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 166 - 306
Target Start/End: Complemental strand, 1369957 - 1369818
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||||||| |||||| |  | ||||||||||  ||||||||    |||||||||||    
T  1369957 tcctaaatttagcaattattcttttaaaaagtcaactatcacaatttccaatgcattcaatagataacttttcatataaaacttattaattaaagtgctt 1369858  T
Q  266 aaagagtgtcccgggagaactcgttaacattttccttaaaa 306  Q
    ||||||||||| || || ||| ||||||| |||||||||||    
T  1369857 aaagagtgtccaggaagcacttgttaaca-tttccttaaaa 1369818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 33013057 - 33013183
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||||  | ||| | ||||||||||||| || |||||||   |||||||||||||||    
T  33013057 aaatttaacaattattcttttaaaaagtcaactattacaatttccaatgtactcaatacacaacttttcataaagaacttactaattaaagtgcttaaag 33013156  T
Q  270 agtgtcccgggagaactcgttaacattt 297  Q
    |||| ||| |||| ||||||||||||||    
T  33013157 agtg-cccaggagcactcgttaacattt 33013183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 3146050 - 3146158
Alignment:
Q  172 atttagcaactattcttttaaaaagtcaactattataatttccaattcattcatt----gcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    |||||| || |||||||||||||||| |||||||| |||||||||| ||||||||    ||||| | |||||||||||||||||  ||||||||||||||    
T  3146050 atttagtaattattcttttaaaaagttaactattacaatttccaatgcattcattcaatgcacaccgtttcattaaaaacttactatttaaagtgcttaa 3146149  T
Q  268 agagtgtcc 276  Q
    |||||||||    
T  3146150 agagtgtcc 3146158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 171 - 273
Target Start/End: Original strand, 1135174 - 1135276
Alignment:
Q  171 aatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaaga 270  Q
    ||||||| || ||||||||||||||||||||||||| ||||| ||||  ||||| |  |||||||||| ||||||||||||| ||||||||| |||||||    
T  1135174 aatttagtaattattcttttaaaaagtcaactattacaattttcaatgtattcaatatacaacttttccttaaaaacttaccatttaaagtgtttaaaga 1135273  T
Q  271 gtg 273  Q
    |||    
T  1135274 gtg 1135276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 306
Target Start/End: Complemental strand, 2258173 - 2258049
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccggga 281  Q
    |||||||||||||||| ||  |||| |||||  |||  ||| | | |||||||||||||| |||||||||| ||||||||||||||||| |||||||||     
T  2258173 tattcttttaaaaagttaatcattacaatttttaatgtatttaatacacaacttttcatttaaaacttaccatttaaagtgcttaaagattgtcccgggt 2258074  T
Q  282 gaactcgttaacattttccttaaaa 306  Q
    | ||||| |||||||||||| ||||    
T  2258073 gcactcgataacattttcctaaaaa 2258049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 167926 - 167857
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttac 251  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||| |||||||||    
T  167926 tattcttttaaaaagtcaactattataatttccaatgcatttattacataacttttcatttaaaacttac 167857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 33949645 - 33949534
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    ||||||||| || |||| ||||||||| |||||||||| |||||| ||| || ||| | ||||||||||||| || |||||||   |||||||| |||||    
T  33949645 taaatttagtaagtattgttttaaaaattcaactattacaatttcaaatgcactcaatacacaacttttcataaataacttactaattaaagtgtttaaa 33949546  T
Q  269 gagtgtcccggg 280  Q
    ||||||| ||||    
T  33949545 gagtgtctcggg 33949534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 2888812 - 2888729
Alignment:
Q  172 atttagcaactattcttttaaaaagtcaactattataatttcca----attcattcattgcacaacttttcattaaaaacttac 251  Q
    |||||| || |||| ||||||||||| |||||||||||||||||    ||||||||| |||||||| |||||||||||||||||    
T  2888812 atttagtaattatttttttaaaaagttaactattataatttccaatgcattcattcaatgcacaacgtttcattaaaaacttac 2888729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 35901955 - 35902041
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    |||| |||||||||||||| ||||| |||||||||| |||||| | || ||||||||||||||||||||   |||||| ||||||||    
T  35901955 tatttttttaaaaagtcaattattacaatttccaatgcattcaatacagaacttttcattaaaaacttattatttaaaatgcttaaa 35902041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 306
Target Start/End: Original strand, 12954740 - 12954876
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||| |||| |||| |||||||||||||||| ||||  ||| | | ||||| |||||| |||||| ||| | |||||||| | |||||    
T  12954740 aaatttagtaattattttttttaaaaatcaactattataattttcaatagatttaatacacaatttttcaataaaaatttatcatttaaagtacataaag 12954839  T
Q  270 agtgtcccgggaga-actcgttaacattttccttaaaa 306  Q
    |||||| | ||||| ||||||||||||||||| |||||    
T  12954840 agtgtctc-ggagacactcgttaacattttccataaaa 12954876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 37427200 - 37427329
Alignment:
Q  170 aaatttagcaactattcttttaaaaag---tcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctta 266  Q
    |||||||| || ||||||||||||||    |||| ||||| ||||| ||||  | ||| | | |||||||||||||||| |||||| |||||||||||||    
T  37427200 aaatttagtaattattcttttaaaaaaaaatcaattattacaattttcaatgtaatcaatactcaacttttcattaaaatcttaccatttaaagtgctta 37427299  T
Q  267 aagagtgtcccgggagaactcgttaacattt 297  Q
    |||||||| ||||  | ||||||||||||||    
T  37427300 aagagtgt-ccggaggcactcgttaacattt 37427329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 311
Target Start/End: Original strand, 45197399 - 45197530
Alignment:
Q  180 actattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgg 279  Q
    ||||||| |||||||||||||| |||  ||||| ||||  ||| ||| | ||||||||||| ||||| ||||  ||||| ||| ||||||||||||| ||    
T  45197399 actattcctttaaaaagtcaacaattgcaattttcaatggattgattacccaacttttcataaaaaatttactatttaatgtgtttaaagagtgtcctgg 45197498  T
Q  280 gagaactcgttaacattttccttaaaacatta 311  Q
      | |||||||||||||| || ||||| ||||    
T  45197499 aggcactcgttaacatttcccataaaaaatta 45197530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 36356022 - 36355944
Alignment:
Q  199 aactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtccc 277  Q
    |||||||  |||||| ||| |||| | | ||||||||||||||||||||||||| |||||||| |||||| ||||||||    
T  36356022 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtacttaaatagtgtccc 36355944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 12829953 - 12829835
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccggga 281  Q
    |||| |||||||||||| | ||||| ||||  |||| |||||| |  | || ||||||||||||||||||| ||||||||||||||| |||||   ||||    
T  12829953 tattattttaaaaagtctattattacaattaacaatgcattcaatatataatttttcattaaaaacttaccatttaaagtgcttaaa-agtgt-ttggga 12829856  T
Q  282 gaactcgttaacattttcctt 302  Q
    | |||||||||||||| ||||    
T  12829855 gcactcgttaacatttccctt 12829835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 5588984 - 5589043
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcatt 241  Q
    ||||||||||||||||||||||||||||||| |||| |||| ||| || || ||||||||    
T  5588984 tattcttttaaaaagtcaactattataattttcaatgcattaattacaaaaattttcatt 5589043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 17081465 - 17081394
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcatt 241  Q
    ||||||||||| |||| ||| |||||||||||||||| |||||| ||| || | | ||||||||||||||||    
T  17081465 aaatttagcaattattttttaaaaaagtcaactattacaatttctaatgcaatgaatgcacaacttttcatt 17081394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 26750611 - 26750694
Alignment:
Q  219 cattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttcctt 302  Q
    |||||| |||| || |||||||||||| |||||  ||||||||||||||||||||  ||| | | |||||||||||||| ||||    
T  26750611 cattcaatgcataatttttcattaaaatcttactatttaaagtgcttaaagagtgctccgagcgcactcgttaacatttccctt 26750694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 306
Target Start/End: Complemental strand, 9735400 - 9735263
Alignment:
Q  168 ctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    |||||||||  || |||| ||| ||||||||||||||||| | || |||| |||| | | ||||||||||||||||||| ||| | |||||| |  ||||    
T  9735400 ctaaatttaataattattttttaaaaaagtcaactattatgactttcaatacatttaatacacaacttttcattaaaaatttatcatttaaaatatttaa 9735301  T
Q  268 agagtgtcccgggagaactcgttaacattttccttaaaa 306  Q
    | |||||| | | |  ||||||||||||||||| |||||    
T  9735300 aaagtgtctc-gaaacactcgttaacattttccataaaa 9735263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 12684576 - 12684490
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    |||||||| ||| | |||||||||| |||||| ||| |||||||| || ||||||| |||||||| |||   |||||||||||||||    
T  12684576 tattctttcaaagaatcaactattacaatttctaatgcattcattacaaaacttttaattaaaaatttattatttaaagtgcttaaa 12684490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 24695760 - 24695856
Alignment:
Q  171 aatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    ||||||| || |||| |||||||||||||||||||| |||||| ||| || | | | |||||||||| ||| |||||||||  ||||||||| |||||    
T  24695760 aatttagtaattattattttaaaaagtcaactattacaatttctaatgcagtgaatacacaactttttatt-aaaacttactatttaaagtgtttaaa 24695856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 3463501 - 3463565
Alignment:
Q  241 taaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttccttaaa 305  Q
    |||||||||||| |||  |||||||||||||||| ||| ||| |  |||||||||||||||||||    
T  3463501 taaaaacttaccattttgagtgcttaaagagtgttccgagagcatccgttaacattttccttaaa 3463565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 3520890 - 3520822
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaactta 250  Q
    |||||||||||||| |||||||||| | |||  ||| |||||| | || ||||||||||||||||||||    
T  3520890 tattcttttaaaaaatcaactattacagtttttaatgcattcaatacataacttttcattaaaaactta 3520822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 37813497 - 37813426
Alignment:
Q  170 aaatttagcaactattcttttaaaaa-gtcaactattataatttccaattcattcattgcacaacttttcat 240  Q
    |||||||| || |||||||||||||| |||||| |||| |||||||||| |||| | | |||||||||||||    
T  37813497 aaatttagtaattattcttttaaaaaagtcaaccattacaatttccaatgcattgaatacacaacttttcat 37813426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 884486 - 884532
Alignment:
Q  228 cacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgt 274  Q
    ||||| |||||||||||||||| |  |||||||||||||||||||||    
T  884486 cacaatttttcattaaaaactttcaatttaaagtgcttaaagagtgt 884532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 12544988 - 12545034
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataattt 212  Q
    |||||||||||| || |||| ||| ||||||||||||||||||||||    
T  12544988 tcctaaatttagtaattattatttcaaaaagtcaactattataattt 12545034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 16723222 - 16723169
Alignment:
Q  249 taccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttcctt 302  Q
    |||| ||||||||||||||| |||||| |||| | |||||||||||||| ||||    
T  16723222 taccatttaaagtgcttaaaaagtgtctcgggggcactcgttaacatttccctt 16723169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 33067531 - 33067595
Alignment:
Q  187 ttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttac 251  Q
    |||||||||||||| ||||| ||| || ||| |||||| | || ||||||||||| |||||||||    
T  33067531 ttttaaaaagtcaattattacaatgtctaatgcattcaatacaaaacttttcatttaaaacttac 33067595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 47187915 - 47187785
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || ||||| |||||||| ||||||||||||||||||||| |||||| | || || ||||||||||||||||||| ||| ||||| ||||||    
T  47187915 aaatttagtaattattcatttaaaaaatcaactattataatttccaatgcattcaatacataatttttcattaaaaacttaccattttaagtgtttaaag 47187816  T
Q  270 agtgtcccgggagaactcgttaacattttcct 301  Q
    |||||| |||||  ||||||||||||||||||    
T  47187815 agtgtcacggga-tactcgttaacattttcct 47187785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 302
Target Start/End: Original strand, 2864172 - 2864285
Alignment:
Q  188 tttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactc 287  Q
    ||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||  ||||||||||||||||||||  ||||| | ||||    
T  2864172 tttaaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccggg-gcactc 2864270  T
Q  288 gttaacattttcctt 302  Q
    |||||||||| ||||    
T  2864271 gttaacatttccctt 2864285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 303
Target Start/End: Complemental strand, 38748815 - 38748683
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || ||||||||||||||||||||||||||||||| |||| || ||| | ||||||||||||| || |||||||   |||||||||||||||    
T  38748815 aaatttagaaattattcttttaaaaagtcaactattataattttcaatgcactcaatacacaacttttcataaataacttactaattaaagtgcttaaag 38748716  T
Q  270 agtgtcccgggagaactcgttaacattttcctta 303  Q
    |||| || ||| | |||||||||||||| |||||    
T  38748715 agtg-cctgggggcactcgttaacatttccctta 38748683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 43397092 - 43396976
Alignment:
Q  187 ttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggagaact 286  Q
    ||||||||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||||  ||||||||| |||| |||||  ||| | | |||    
T  43397092 ttttaaaaagtcaactattataatttccaatgcatttaatacacaacttttcattaaaaacttactatttaaagtgtttaacgagtgcgccgagggcact 43396993  T
Q  287 cgttaacattttcctta 303  Q
    ||||||||||| |||||    
T  43396992 cgttaacatttccctta 43396976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 45640559 - 45640685
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||  ||||||||||| |||||||||| ||||||||||| |||| |||||||| ||||| ||||||| ||||||||||  |||||| |||||||||    
T  45640559 aaatttaagaactattctttcaaaaagtcaattattataattttcaatgcattcattacacaa-ttttcatcaaaaacttactatttaaaatgcttaaag 45640657  T
Q  270 agtgtcccgggagaactcgttaacattt 297  Q
    |||||| ||||   ||||||||||||||    
T  45640658 agtgtctcggggacactcgttaacattt 45640685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 39150590 - 39150697
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    |||||||||||| || ||||||| ||||||||||||||||| ||||| |||| |||||| | || || |||||||||||| |||||   |||||||||||    
T  39150590 tcctaaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcattcaatacataaattttcattaaaatcttactagttaaagtgctt 39150689  T
Q  266 aaagagtg 273  Q
    ||||||||    
T  39150690 aaagagtg 39150697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 34409773 - 34409872
Alignment:
Q  197 tcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacatt 296  Q
    |||| |||||||||||||||| |||||| | ||||  ||||||||||||||||||| |||||||||| |||||| |||||| | || |||||||||||||    
T  34409773 tcaattattataatttccaatgcattcaatacacat-ttttcattaaaaacttaccatttaaagtgcataaagaatgtcccagaagcactcgttaacatt 34409871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 170 - 302
Target Start/End: Original strand, 44829284 - 44829415
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||||||| |||| ||||||||||| |||||  ||| |||||| | |||||||||| ||| ||||||||||  ||||||| |||||||    
T  44829284 aaatttagtaattattctttaaaaaggtcaactattacaatttttaatacattcaatacacaactttttatt-aaaacttaccgattaaagtacttaaag 44829382  T
Q  270 agtgtcccgggagaactcgttaacattttcctt 302  Q
    |||||||||| |  ||||||||| |||| ||||    
T  44829383 agtgtcccggaaacactcgttaatatttccctt 44829415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 307
Target Start/End: Original strand, 44329620 - 44329745
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccggga 281  Q
    ||||||||||||||||||||||||||||||| |||| |||||| | || || |||| | ||||||||| |  ||||||||| ||||||| ||||  || |    
T  44329620 tattcttttaaaaagtcaactattataattttcaatgcattcaatacataattttttactaaaaactttctatttaaagtgtttaaagaatgtcgtggaa 44329719  T
Q  282 gaactcgttaacattttccttaaaac 307  Q
      |||||||||||||| ||| |||||    
T  44329720 acactcgttaacatttccctcaaaac 44329745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 304
Target Start/End: Complemental strand, 14746294 - 14746160
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    ||||||||||| |||| | ||||||| |||||| ||||||||| |||| |  | | | |||||||||||||  | |||||||   ||||||||||| |||    
T  14746294 aaatttagcaattattttcttaaaaaatcaactgttataattttcaatgctatgaatacacaacttttcatatagaacttactaattaaagtgcttgaag 14746195  T
Q  270 agtgtcccgggagaactcgttaacattttccttaa 304  Q
    |||| | |||| | |||||||||||||||||||||    
T  14746194 agtgcctcgggggcactcgttaacattttccttaa 14746160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 303
Target Start/End: Complemental strand, 34232805 - 34232672
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttacct-tttaaagtgct 264  Q
    |||| |||||||||| ||||||||||||||||||||||||| ||||| |||| | |||| | |||||||     ||||||| | | || ||||| |||||    
T  34232805 tccttaatttagcaattattcttttaaaaagtcaactattacaattttcaatgctttcaatacacaact-----ttaaaaagtcaactatttaaggtgct 34232711  T
Q  265 taaagagtgtcccgggagaactcgttaacattttcctta 303  Q
    |||||||||| ||| | | |||||||||||||| |||||    
T  34232710 taaagagtgttccgagggcactcgttaacatttccctta 34232672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 8794424 - 8794504
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaa 246  Q
    |||||||||||| || ||||||||||||||||||||||||||||||| |||| || ||  | |||||||||| || |||||    
T  8794424 tcctaaatttagtaattattcttttaaaaagtcaactattataattttcaatgcactccatacacaactttttataaaaaa 8794504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 31889186 - 31889278
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaactttt-cattaaaaacttaccttttaaagtgcttaaagagtg 273  Q
    |||| |||| |||||||||||||||  ||||| ||| |||| | | |||||||||| ||||||||||||||| |||||| |||||||||||||    
T  31889186 tattttttttaaaagtcaactattacgatttctaatgcatttaatacacaactttttcattaaaaacttaccatttaaaatgcttaaagagtg 31889278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 39156273 - 39156380
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaa----cttttcattaaaaacttaccttttaaagtgctt 265  Q
    |||||||| || |||||||||||||||||||||| || |||||||||| |||||| | |||||     |||| |||||||| ||||| ||||||||| ||    
T  39156273 aaatttagtaattattcttttaaaaagtcaactactacaatttccaatgcattcaatacacaattttttttttattaaaaatttaccatttaaagtgttt 39156372  T
Q  266 aaagagtg 273  Q
    ||| ||||    
T  39156373 aaaaagtg 39156380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 7212785 - 7212885
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || ||| |||||||||||| ||| |||| |||||||||| ||||||     |||||||| ||| |||||||||  ||||||||| ||||||    
T  7212785 aaatttagtaattatacttttaaaaagttaacaattacaatttccaatgcattca-----caactttttatttaaaacttacaatttaaagtgtttaaag 7212879  T
Q  270 agtgtc 275  Q
    ||||||    
T  7212880 agtgtc 7212885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 604508 - 604444
Alignment:
Q  187 ttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttac 251  Q
    |||||||||||||| |||||||||||||||| || ||| | ||||| |||||||||| |||||||    
T  604508 ttttaaaaagtcaattattataatttccaatgcactcaatacacaatttttcattaagaacttac 604444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 17552843 - 17552972
Alignment:
Q  168 ctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    |||||||||  || |||| ||||||||||||||||||||||||||  |||  ||| | |  |||| ||||  ||||||||| |||||||||||| |||||    
T  17552843 ctaaatttaataattatttttttaaaaagtcaactattataatttttaatgtatttaatatacaattttttgttaaaaactgaccttttaaagtacttaa 17552942  T
Q  268 agagtgtcccgggagaactcgttaacattttc 299  Q
    |||| |  || | || ||||||||||||||||    
T  17552943 agagag--cctgaagcactcgttaacattttc 17552972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 38491233 - 38491309
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaa 246  Q
    |||||||| || |||| | |||||||||||||||||| ||||| |||| |||||| | ||||| |||||||||||||    
T  38491233 aaatttagtaattattatgttaaaaagtcaactattacaatttacaatgcattcaatacacaatttttcattaaaaa 38491309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 277
Target Start/End: Complemental strand, 4851321 - 4851232
Alignment:
Q  188 tttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtccc 277  Q
    ||||||||||||||||||| |||||| ||| || | | | | ||||||||||| || |||||||   |||||||||||||||||| ||||    
T  4851321 tttaaaaagtcaactattacaatttcaaatgcacttactacccaacttttcataaagaacttactaattaaagtgcttaaagagtatccc 4851232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 44329488 - 44329581
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtc 275  Q
    ||||||||||||||||||| ||||||||||| || | |||| | |  | ||||||| |||||||| ||    ||||||||||||||||||||||    
T  44329488 tattcttttaaaaagtcaattattataattttcagtgcatttaatatataactttttattaaaaattttatatttaaagtgcttaaagagtgtc 44329581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 40460805 - 40460725
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtg 262  Q
    ||||| |||||||| |||| ||||| | ||||||||| ||||| |  |||| ||||||||||||||||||  |||||||||    
T  40460805 tattcatttaaaaaatcaattattacagtttccaatttattcaatatacaatttttcattaaaaacttactatttaaagtg 40460725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 297
Target Start/End: Complemental strand, 2995065 - 2994940
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||| ||||||||||| |||||||||||||| |||||   | | | |||||||||| | |||||||||||  ||||||||| |||||     
T  2995065 aaatttagtaattattattttaaaaagtaaactattataattttcaattttgtaaatacacaacttttta-taaaaacttactatttaaagtgtttaaa- 2994968  T
Q  270 agtgtcccgggagaactcgttaacattt 297  Q
    || || ||||| | || |||||||||||    
T  2994967 agagtgccgggggcacgcgttaacattt 2994940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 270
Target Start/End: Original strand, 36563730 - 36563814
Alignment:
Q  184 ttcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaaga 270  Q
    |||||| |||| ||||||||||||||||| |||| |||| | | ||||| ||||||| ||||||||  | ||||||||| |||||||    
T  36563730 ttctttcaaaacgtcaactattataattttcaatgcattaaatacacaatttttcataaaaaactt--catttaaagtgtttaaaga 36563814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 302
Target Start/End: Original strand, 3982277 - 3982408
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||| ||  ||||||||||||||||||||||  ||| |||| | |  ||||||||| | |||||| ||||  ||||||||| ||||||    
T  3982277 aaatttagtaattatttttagaaaaagtcaactattataatttataatgcattgaatagacaactttt-aataaaaatttactatttaaagtgtttaaag 3982375  T
Q  270 agtgtcccgggaga-actcgttaacattttcctt 302  Q
    |||| | | ||||| |||||||||||||| ||||    
T  3982376 agtg-caccggagacactcgttaacatttccctt 3982408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 8365511 - 8365596
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttac 251  Q
    |||||||||||  || |||||||||||||| |||||||||| ||| | |||| |||||| | ||  | |||||| |||||||||||    
T  8365511 tcctaaatttaataattattcttttaaaaaatcaactattacaatcttcaatgcattcaatacatcatttttcaataaaaacttac 8365596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 26811330 - 26811258
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttc 238  Q
    ||||| |||||| || |||||||||||||| | |||||||| |||||||||| ||| || |  ||||||||||    
T  26811330 tcctatatttagtaattattcttttaaaaaattaactattagaatttccaatacatacaatatacaacttttc 26811258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 9449047 - 9448945
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||||||||||||| |||||||||||||||| |||| |||||| | ||||||||||||||||||||||||| ||||||||| ||||||    
T  9449047 aaatttagtaattattcttttaaaaa-tcaactattataattttcaatacattcaatacacaacttttcattaaaaacttaccatttaaagtgtttaaag 9448949  T
Q  270 agtg 273  Q
    ||||    
T  9448948 agtg 9448945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 166 - 276
Target Start/End: Complemental strand, 19890287 - 19890177
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    |||||||||||| || ||||||||||||||||||||||||| |||||||||| |||| | | |||||||||||||||||||||||   ||| ||||||||    
T  19890287 tcctaaatttagtaattattcttttaaaaagtcaactattacaatttccaatgcatttaatacacaacttttcattaaaaacttattattttaagtgctt 19890188  T
Q  266 aaagagtgtcc 276  Q
    ||||| |||||    
T  19890187 aaagaatgtcc 19890177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 170 - 312
Target Start/End: Original strand, 41933143 - 41933285
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| |||| || ||| |  ||||||||| || ||||| ||||   |||||||||||||||    
T  41933143 aaatttagcaattattcttttaaaaagtcaactattacaattttcaatgcactcagtaaacaactttttataaaaaatttactaattaaagtgcttaaag 41933242  T
Q  270 agtgtcccgggagaactcgttaacattttccttaaaacattaa 312  Q
    ||||  ||||||  ||||||||| ||||||| ||||| |||||    
T  41933243 agtgctccgggaacactcgttaatattttccataaaaaattaa 41933285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 301
Target Start/End: Complemental strand, 1334966 - 1334847
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtg-tcccggg 280  Q
    |||||||| ||||| |||||||||| |||||||||| |||||| |  |||| ||||||||||||||||| | |||||||||||||||||||| ||| |||    
T  1334966 tattctttaaaaaaatcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttatcatttaaagtgcttaaagagtgctccgggg 1334867  T
Q  281 agaactcgttaacattttcct 301  Q
    | || ||||||||||||||||    
T  1334866 acaa-tcgttaacattttcct 1334847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 31452437 - 31452314
Alignment:
Q  173 tttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagt 272  Q
    ||||| || |||||||||||||||||||| |||| ||||| |||| |||||| | |||||||||| |||||||||||||  ||||||||||||||| | |    
T  31452437 tttagtaattattcttttaaaaagtcaacaattacaattttcaatgcattcaatacacaactttt-attaaaaacttactatttaaagtgcttaaataat 31452339  T
Q  273 gtcccgggagaactcgttaacattt 297  Q
    || ||||||  ||||||||||||||    
T  31452338 gttccgggaacactcgttaacattt 31452314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 31017402 - 31017271
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||||||| |||||||||| |||| |||||| |||| |||| | | ||||||||||||||||||||||  | ||||||||||||||||    
T  31017402 aaatttagtaattattctttaaaaaagtcaaatattttaattttcaatgcatttaatacacaacttttcattaaaaacttttcatttaaagtgcttaaag 31017303  T
Q  270 agtgtcccgggagaactcgttaacattttcct 301  Q
    | || ||||   | ||||||||||||||||||    
T  31017302 aatgccccgaaggcactcgttaacattttcct 31017271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 19514879 - 19514986
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||  |||| || | | |  ||||||||||||  |||||||||  ||||||||||||    
T  19514879 tcctaaatttaacaattattctttttaaaagtcaactattataattatcaatgcaatgaatatacaacttttcatataaaacttacaatttaaagtgctt 19514978  T
Q  266 aaagagtg 273  Q
    ||||||||    
T  19514979 aaagagtg 19514986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 134 - 300
Target Start/End: Complemental strand, 34904928 - 34904752
Alignment:
Q  134 atgggtcttgttaacgagtgctctcggggcactcctaaa----------tttagcaactattcttttaaaaagtcaactattataatttccaattcattc 223  Q
    ||||||||||||||||||||||||| |||||||| | ||          ||||| || |||||||||||||| |||||||||| |||||  |||  |||     
T  34904928 atgggtcttgttaacgagtgctctctgggcactctttaagtatctcatatttagtaattattcttttaaaaaatcaactattacaatttttaatgaattt 34904829  T
Q  224 attgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttcc 300  Q
    | | || || |||||||||| |||||||  ||||||||||||||||||||  |||| || ||||||| |||||||||    
T  34904828 aatacaaaatttttcattaataacttacaatttaaagtgcttaaagagtgctccggaagcactcgttgacattttcc 34904752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 301
Target Start/End: Original strand, 15505568 - 15505687
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccggga 281  Q
    |||||||| ||||||| |||||||||||||| |||| |||||| | ||||||||||||||  ||||||||  ||||||||| || ||||||| ||   ||    
T  15505568 tattctttcaaaaagtaaactattataattttcaatacattcaatacacaacttttcattccaaacttactatttaaagtgtttcaagagtg-ccacaga 15505666  T
Q  282 ga-actcgttaacattttcct 301  Q
    || ||||||||||||||||||    
T  15505667 gacactcgttaacattttcct 15505687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 4762361 - 4762464
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||| ||||| |||||||||||||||||||| |||| |||||| | ||||| |||| |||||||| ||||  ||||||||| |||||     
T  4762361 aaatttagtaattattattttataaagtcaactattataattttcaatgcattcaatacacaattttttattaaaaatttactatttaaagtgattaaaa 4762460  T
Q  270 agtg 273  Q
    ||||    
T  4762461 agtg 4762464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 29239326 - 29239235
Alignment:
Q  187 ttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccg 278  Q
    |||||||||||||||||||| ||||| |||| |||||| | ||| | ||||||||||| | ||||   ||||||||||||||||||||||||    
T  29239326 ttttaaaaagtcaactattacaattttcaatgcattcaatacaccatttttcattaaagatttactaattaaagtgcttaaagagtgtcccg 29239235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 7673202 - 7673286
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaactta 250  Q
    ||||||||||||||| |||||| || ||||||||||||||| ||||| |||| |||| | | |||||||||| ||  ||||||||    
T  7673202 tcctaaatttagcaattattctctttaaaagtcaactattacaattttcaatacatttagtacacaactttttatataaaactta 7673286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 9173803 - 9173696
Alignment:
Q  168 ctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattc-attgcacaacttttcattaaaaacttaccttttaaagtgctta 266  Q
    ||||||||||||| |||| ||||||||| |||||||||| ||||| |||| || || | | ||||| ||||||| |||||||| |   |||||||| |||    
T  9173803 ctaaatttagcaattatttttttaaaaaatcaactattacaattttcaatacaatcaaatacacaatttttcataaaaaacttgctaattaaagtgttta 9173704  T
Q  267 aagagtgt 274  Q
    ||||||||    
T  9173703 aagagtgt 9173696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 20064919 - 20065020
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    |||||||| ||| || ||||||||||||||||||||||||| ||||| ||||  ||| | | ||||| |||||| ||||| ||| |  ||||||||||||    
T  20064919 tcctaaatatagtaattattcttttaaaaagtcaactattacaattttcaatgtattaaatacacaatttttca-taaaacctttctatttaaagtgctt 20065017  T
Q  266 aaa 268  Q
    |||    
T  20065018 aaa 20065020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 38533962 - 38533864
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||| ||||||| ||||||||||| ||||||| ||| |||||| | ||||| ||||| ||| ||||||||  ||| || |||||||||    
T  38533962 aaatttagtaattatt-ttttaaatagtcaactattgtaatttctaatgcattcaatacacaatttttctttacaaacttactatttcaaatgcttaaag 38533864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 37993088 - 37993190
Alignment:
Q  168 ctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    |||||||||  ||||||||||| ||||| |||||||||| ||||| |||| |||| | | || || |||| |||||||| ||||  |||||| || ||||    
T  37993088 ctaaatttaataactattctttcaaaaaatcaactattacaattttcaatgcatttaatacataattttttattaaaaatttactatttaaaatgtttaa 37993187  T
Q  268 aga 270  Q
    |||    
T  37993188 aga 37993190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 41551385 - 41551425
Alignment:
Q  263 cttaaagagtgtcccgggagaactcgttaacattttcctta 303  Q
    ||||||||||| |||||| | ||||||||||||||||||||    
T  41551385 cttaaagagtgccccgggggcactcgttaacattttcctta 41551425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 43228919 - 43228867
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcatt 222  Q
    ||||||||||| ||||| |||||||||| || |||||||||||  ||||||||    
T  43228919 aaatttagcaattattcctttaaaaagttaattattataatttttaattcatt 43228867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 51351287 - 51351396
Alignment:
Q  168 ctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    |||||||||  || ||||||||||||||||  | |||||||||||||||| |||| | | ||||| |||||||||||||||||| |||||||||||||||    
T  51351287 ctaaatttaataattattcttttaaaaagtttagtattataatttccaatacatttaatacacaatttttcattaaaaacttactttttaaagtgcttaa 51351386  T
Q  268 agagtgtccc 277  Q
    ||||||||||    
T  51351387 agagtgtccc 51351396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 166 - 297
Target Start/End: Complemental strand, 29083998 - 29083866
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttac-cttttaaagtgct 264  Q
    ||||||| |||| || |||||||||||||||| |||||||| |||||  ||| |||| | | |||||||||||| |||||||||||  ||||||||||||    
T  29083998 tcctaaacttagtaattattcttttaaaaagttaactattacaatttttaatgcatttaatacacaacttttcaataaaaacttactattttaaagtgct 29083899  T
Q  265 taaagagtgtcccgggagaactcgttaacattt 297  Q
    |||||||| ||| ||  | ||||||||||||||    
T  29083898 taaagagtatcctggaggcactcgttaacattt 29083866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 303
Target Start/End: Complemental strand, 48180264 - 48180132
Alignment:
Q  171 aatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaaga 270  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||| ||||  || | |||| |||||| ||||||||||  ||||||||| | |||||    
T  48180264 aatttaacaattattcttttaaaaagtcaactattacaatttccaatgcattggttacccaacatttcataaaaaacttactatttaaagtgataaaaga 48180165  T
Q  271 gtgtcccgggaga-actcgttaacattttcctta 303  Q
    |||| || ||||| | |||||||||||| |||||    
T  48180164 gtgttcc-ggagatattcgttaacatttccctta 48180132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 166 - 297
Target Start/End: Complemental strand, 42846104 - 42845977
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaatt-cattcattgcacaacttttcattaaaaacttaccttttaaagtgct 264  Q
    |||||||||||| || |||||||| |||||||||||||||  ||||| ||||| |||||| | ||||||||||||||||||||||| | ||||     ||    
T  42846104 tcctaaatttagtaattattctttgaaaaagtcaactatttcaattttcaattgcattcaatacacaacttttcattaaaaacttatcattta-----ct 42846010  T
Q  265 taaagagtgtcccgggagaactcgttaacattt 297  Q
    |||||||||||  ||||| |||| |||||||||    
T  42846009 taaagagtgtcatgggagcactccttaacattt 42845977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 306
Target Start/End: Complemental strand, 12086857 - 12086721
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || ||||||||| ||||| || |||||||||||| || | |||||| | ||||  ||||||||||||||||||  |||  ||| ||||||     
T  12086857 aaatttagtaattattctttttaaaagacatctattataattttcagtgcattcaatacacattttttcattaaaaacttactatttcgagtacttaaat 12086758  T
Q  270 agtgtcccgggagaactcgttaacattttccttaaaa 306  Q
    ||||||||| | | |||||||||||||| || |||||    
T  12086757 agtgtcccgagggcactcgttaacatttcccataaaa 12086721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 40673458 - 40673543
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    |||||||||||||| |||||||||| |||||| |||  ||||| | ||| ||||||| ||||||||||| | ||||||||||||||    
T  40673458 tattcttttaaaaattcaactattacaatttctaatatattcaatacactacttttctttaaaaacttatcatttaaagtgcttaa 40673543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 26900106 - 26900014
Alignment:
Q  182 tattcttttaaaaa-gtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtg 273  Q
    |||||||||||||| ||||||||||| ||||| |||| |||| ||| || ||||||||||  |||| ||||| ||||||||| ||||||||||    
T  26900106 tattcttttaaaaaagtcaactattacaattttcaatgcatttattacataacttttcatataaaatttaccatttaaagtgtttaaagagtg 26900014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 306
Target Start/End: Complemental strand, 39551949 - 39551814
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    ||||||||||| |||||||||||||| ||||||| || ||||| |||| || ||| |  |||||||||||| || |||||||   |||||||| ||||||    
T  39551949 aaatttagcaattattcttttaaaaaatcaacta-tacaattttcaatacactcaataaacaacttttcataaagaacttactaattaaagtgtttaaag 39551851  T
Q  270 agtgtcccgggagaactcgttaacattttccttaaaa 306  Q
    |||  || |  || |||||||||||||| ||||||||    
T  39551850 agtaccctgaaagcactcgttaacatttcccttaaaa 39551814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 22730568 - 22730509
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcatt 241  Q
    ||||||||||||||||||||||||||||||| |||| |||| ||| || || ||||||||    
T  22730568 tattcttttaaaaagtcaactattataattttcaatgcattaattacaaaaattttcatt 22730509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 24791526 - 24791588
Alignment:
Q  188 tttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaactta 250  Q
    ||||||||||||||||||| ||||| ||||  ||||| | || ||||||||||||||||||||    
T  24791526 tttaaaaagtcaactattacaattttcaatgtattcaatacataacttttcattaaaaactta 24791588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 41309936 - 41309842
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattc---attgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtg 273  Q
    |||||||||||||||| || ||||| ||||| |||| ||||    || | |||| ||||||||||||||||| | ||||||||| ||||||||||    
T  41309936 tattcttttaaaaagttaattattacaattttcaatgcatttgatatagtacaatttttcattaaaaacttatcatttaaagtgtttaaagagtg 41309842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 8957697 - 8957755
Alignment:
Q  243 aaaacttaccttttaaagtgcttaaagagtgtcccgggagaactcgttaacattttcctt 302  Q
    |||| |||| ||||||||  |||||||||||||| ||||| |||||||||||||||||||    
T  8957697 aaaagttactttttaaagatcttaaagagtgtcc-gggagcactcgttaacattttcctt 8957755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 26143168 - 26143214
Alignment:
Q  228 cacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgt 274  Q
    ||||| ||||||||||||||||||| |||||| || |||||||||||    
T  26143168 cacaaattttcattaaaaacttaccatttaaaatgtttaaagagtgt 26143214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 42939856 - 42939925
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttac 251  Q
    ||||||||||||||||||||||||  ||||| ||||  ||| | | ||||| |||||||| |||||||||    
T  42939856 tattcttttaaaaagtcaactattgcaattttcaatgaatttaatacacaatttttcatttaaaacttac 42939925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 49362436 - 49362368
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaactta 250  Q
    |||||||||||||||| |||||||| ||||||||||  ||| | |  |||| |||| ||||||||||||    
T  49362436 tattcttttaaaaagttaactattacaatttccaatgtatttaatatacaattttttattaaaaactta 49362368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 183 - 303
Target Start/End: Original strand, 30801766 - 30801886
Alignment:
Q  183 attcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccgggag 282  Q
    |||||||| |||||  || ||||||||||| |||| |||||| | |||||||||| ||||||||||| |  ||||||||||||||||| ||||||||| |    
T  30801766 attcttttgaaaagctaagtattataattttcaatgcattcaatacacaacttttaattaaaaacttgctatttaaagtgcttaaagaatgtcccggggg 30801865  T
Q  283 aactcgttaacattttcctta 303  Q
     ||||||||||||||||||||    
T  30801866 tactcgttaacattttcctta 30801886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 170 - 300
Target Start/End: Complemental strand, 17215777 - 17215647
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || |||| |||||||||||||||||||| ||||| |||| |||||| |  |||| |||| |||||||||||||| ||||||||||||||||    
T  17215777 aaatttagtaattatttttttaaaaagtcaactattacaattttcaatgcattcaataaacaattttttattaaaaacttaccatttaaagtgcttaaag 17215678  T
Q  270 agtgtcccgggagaactcgttaacattttcc 300  Q
    ||||  |||   | |||||||||||||||||    
T  17215677 agtgatccgaaggcactcgttaacattttcc 17215647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 278
Target Start/End: Original strand, 31855078 - 31855174
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccg 278  Q
    |||| |||||||||||||||||||| |||||||||| |||||| |  |||| ||||||||||||||||||  ||||||||||||||||||| |||||    
T  31855078 tattattttaaaaagtcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttactatttaaagtgcttaaagagtatcccg 31855174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 296
Target Start/End: Original strand, 9762828 - 9762939
Alignment:
Q  184 ttcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttca-ttaaaaacttaccttttaaagtgcttaaagagtgtcccgggag 282  Q
    ||||||||||||||||| |||||||||||| ||| |||||| | |||||||||||| ||||||| ||||| ||||||||| ||||||||||  || ||||    
T  9762828 ttcttttaaaaagtcaattattataatttctaatacattcagtacacaacttttcatttaaaaatttaccatttaaagtgattaaagagtg--cccggag 9762925  T
Q  283 aactcgttaacatt 296  Q
     |||||||||||||    
T  9762926 cactcgttaacatt 9762939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 32823701 - 32823821
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtcccggga 281  Q
    ||||||||| ||||||||| ||||| ||||| |||| |||||| | ||||||||||||||||||||||    ||||||||||||||||||||  ||||      
T  32823701 tattcttttgaaaagtcaattattacaattttcaatgcattcaatacacaacttttcattaaaaacttgttatttaaagtgcttaaagagtgctccggag 32823800  T
Q  282 gaactcgttaacattttcctt 302  Q
    | |||||||||||||| ||||    
T  32823801 gcactcgttaacatttccctt 32823821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 1840994 - 1841084
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaa 259  Q
    ||||||||  || |||||||||||||| |||||||||| |||||||||| |||||| | |||||||||| |||||||||||| | ||||||    
T  1840994 taaatttaataattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttaattaaaaacttatcatttaaa 1841084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 170 - 303
Target Start/End: Original strand, 7421684 - 7421817
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| || ||||  ||||||||||||| ||||| ||||| |||| |||| | | |||||||||| | |||||  ||||  ||||||||||||||||    
T  7421684 aaatttagtaattatttatttaaaaagtcaaatattacaattttcaatgcatttaatacacaactttttaataaaactttactatttaaagtgcttaaag 7421783  T
Q  270 agtgtcccgggagaactcgttaacattttcctta 303  Q
    |||||| | |||  ||||||||||||||| ||||    
T  7421784 agtgtcacaggaacactcgttaacatttttctta 7421817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 23399121 - 23399226
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    ||||||||| || |||||||||||||||| |||||||||||||| ||||  |||| ||||| ||||||| ||  ||||||||   |||||||| ||||||    
T  23399121 taaatttagaaattattcttttaaaaagttaactattataattttcaatgtattcgttgcataacttttaatataaaacttaatatttaaagtacttaaa 23399220  T
Q  269 gagtgt 274  Q
    ||||||    
T  23399221 gagtgt 23399226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 298
Target Start/End: Original strand, 28874410 - 28874539
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    |||| |||| || ||||||||| |||| ||||||||||||||||||||| |||||| | || || ||||||||||||||||    |||||| || |||||    
T  28874410 taaaattagtaattattcttttgaaaaatcaactattataatttccaatgcattcaatacaaaatttttcattaaaaacttgttatttaaaatgtttaaa 28874509  T
Q  269 gagtgtcccgggagaactcgttaacatttt 298  Q
    || | ||||||  | |||||||||||||||    
T  28874510 gaatatcccggaggcactcgttaacatttt 28874539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 306
Target Start/End: Original strand, 27778762 - 27778900
Alignment:
Q  166 tcctaaatttagcaactattctttt-aaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgct 264  Q
    |||||||||||| || |||| |||| ||||||||||| |||||||||| |||| |||||| | ||| | |||||| |||||| ||||| |||||||||||    
T  27778762 tcctaaatttagtaattattttttttaaaaagtcaacgattataattttcaatgcattcaatacac-atttttca-taaaaatttaccatttaaagtgct 27778859  T
Q  265 taaagagtgtcccgggagaactcgttaacattttccttaaaa 306  Q
    ||||||||| | ||| |  || ||||||||||||||| ||||    
T  27778860 taaagagtg-ctcggaaacacacgttaacattttcctaaaaa 27778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 3766301 - 3766383
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgct 264  Q
    ||||||||||||||||||| ||||| |||||  ||| |||||||| || ||||||||||  |||||||| | |||||||||||    
T  3766301 tattcttttaaaaagtcaattattacaatttataatacattcattacataacttttcatataaaacttatcatttaaagtgct 3766383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 19293551 - 19293446
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgctt 265  Q
    ||||||||||| ||| |||| ||||||||||| |||||||| ||||||| || || ||| |   ||||||||||| |||||| |||   |||||||||||    
T  19293551 tcctaaatttaacaattattattttaaaaagttaactattacaatttccgatgcactcaataaccaacttttcataaaaaacctactaattaaagtgctt 19293452  T
Q  266 aaagag 271  Q
    ||||||    
T  19293451 aaagag 19293446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 5446758 - 5446625
Alignment:
Q  168 ctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    ||||| |||| || ||||||||| || |||||||| ||| ||||| |||| |||||| ||||| |||||| |||||||| || |  |||||||||| |      
T  5446758 ctaaaattagtaattattcttttgaatagtcaactgttacaattttcaatgcattcaatgcaccacttttaattaaaaaattgctatttaaagtgc-tcg 5446660  T
Q  268 agagtgtcccgggagaactcgttaacattttcctta 303  Q
    ||||||| ||||| | |||||||||||||| |||||    
T  5446659 agagtgt-ccgggggcactcgttaacatttccctta 5446625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 2864890 - 2865016
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaa-acttaccttttaaagtgcttaaa 268  Q
    ||||||||||| |||| ||| |||||   |||||||| ||||| |||| |||| | | ||||| ||||||| |||| ||||||| |||||| || |||||    
T  2864890 aaatttagcaattattttttcaaaaat--aactattacaatttacaatgcattaaatacacaatttttcatcaaaaaacttaccatttaaaatgtttaaa 2864987  T
Q  269 gagtgtcccgggagaactcgttaacattt 297  Q
    ||||||| |||| | ||| ||||||||||    
T  2864988 gagtgtctcgggggcactagttaacattt 2865016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 30739609 - 30739714
Alignment:
Q  168 ctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaa 267  Q
    |||||||||| || |||||| ||||||||| ||||  ||  ||||||||| |||||| | ||||| ||||||||||||| ||| | ||| || |||||||    
T  30739609 ctaaatttagtaattattctattaaaaagttaactggtacgatttccaatgcattcaatacacaatttttcattaaaaatttatcattttaaatgcttaa 30739708  T
Q  268 agagtg 273  Q
    | ||||    
T  30739709 aaagtg 30739714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 1479186 - 1479084
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaag 269  Q
    |||||||| ||  |||||||||||||| ||| ||| | ||||| |||| |||| | | ||||| ||| ||| ||||| ||||| ||||||||||||||||    
T  1479186 aaatttagtaatcattcttttaaaaaggcaattatgacaattttcaatgcattgaatacacaattttacat-aaaaatttaccatttaaagtgcttaaag 1479088  T
Q  270 agtg 273  Q
    ||||    
T  1479087 agtg 1479084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 2692524 - 2692477
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaat 217  Q
    |||||||| || |||| |||||||||||||||||||| ||||||||||    
T  2692524 aaatttagtaattattattttaaaaagtcaactattacaatttccaat 2692477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 11720976 - 11720925
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaat 217  Q
    ||||||||||| ||| ||||||||||| ||||||||||||| ||||| ||||    
T  11720976 tcctaaatttaacaattattcttttaagaagtcaactattacaattttcaat 11720925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 26669361 - 26669292
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttac 251  Q
    ||||||||||||||||||||||||| ||||| || |  ||| | | || |||||||||||||||| ||||    
T  26669361 tattcttttaaaaagtcaactattacaattttcactgtatttaatacataacttttcattaaaaatttac 26669292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 172 - 297
Target Start/End: Complemental strand, 62617 - 62492
Alignment:
Q  172 atttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagag 271  Q
    |||||| || |||||||||||||||||||||||||  |||| |||| |||||| | || || |||| |||||||||||||  ||||||||||||||||||    
T  62617 atttagtaattattcttttaaaaagtcaactattacgattttcaatgcattcaatacataattttttattaaaaacttactatttaaagtgcttaaagag 62518  T
Q  272 tgtcccgggaga-actcgttaacattt 297  Q
    |  ||| ||||| ||||||||||||||    
T  62517 t-accccggagacactcgttaacattt 62492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 20330 - 20238
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagagtgtc 275  Q
    |||||||||||||||| |||||||| |||||| ||| |||| | | |||||||||||| |||||||||| | ||||||||||||||||||||||    
T  20330 tattcttttaaaaagttaactattacaatttcaaatgcattaaatacacaacttttca-taaaaacttatcatttaaagtgcttaaagagtgtc 20238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 298
Target Start/End: Original strand, 1076 - 1205
Alignment:
Q  169 taaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaa 268  Q
    |||| |||| || ||||||||| |||| ||||||||||||||||||||| |||||| | || || ||||||||||||||||    |||||| || |||||    
T  1076 taaaattagtaattattcttttgaaaaatcaactattataatttccaatgcattcaatacaaaatttttcattaaaaacttgttatttaaaatgtttaaa 1175  T
Q  269 gagtgtcccgggagaactcgttaacatttt 298  Q
    || | ||||||  | |||||||||||||||    
T  1176 gaatatcccggaggcactcgttaacatttt 1205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 1786 - 1723
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaa 245  Q
    ||||||||||||||| ||||||||| |||||||||| |||| | ||||||||||||||| ||||    
T  1786 tattcttttaaaaagccaactattacaatttccaatgcattgaatgcacaacttttcataaaaa 1723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 1030 - 950
Alignment:
Q  166 tcctaaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaa 246  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||| ||||  ||| | | |||| |||||||| |||||    
T  1030 tcctaaatttagcaattgttcttttaaaaagtcaactattacaattttcaatgtattgaatacacatcttttcataaaaaa 950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 1432 - 1501
Alignment:
Q  182 tattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttac 251  Q
    ||||||||||||||||||||||||| ||||| || |  ||| | | || |||||||||||||||| ||||    
T  1432 tattcttttaaaaagtcaactattacaattttcactgtatttaatacataacttttcattaaaaatttac 1501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 273
Target Start/End: Complemental strand, 103741 - 103640
Alignment:
Q  172 atttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaacttaccttttaaagtgcttaaagag 271  Q
    |||||| || ||||||||||||||||| | ||||| |||||  ||| |||||| |  |||| ||||||||||||| |||   ||| || |||||||||||    
T  103741 atttagtaattattcttttaaaaagtcgaatattacaatttttaatgcattcaatatacaatttttcattaaaaatttattattttaaatgcttaaagag 103642  T
Q  272 tg 273  Q
    ||    
T  103641 tg 103640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 335942 - 335866
Alignment:
Q  170 aaatttagcaactattcttttaaaaagtcaactattataatttccaattcattcattgcacaacttttcattaaaaa 246  Q
    |||||||| || ||||| ||| |||||| || ||||||||||| ||||  ||||  | |||||||||||||||||||    
T  335942 aaatttagtaattattcatttcaaaagttaattattataattttcaatgtattcgatacacaacttttcattaaaaa 335866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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