View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_112 (Length: 340)
Name: NF6864A_low_112
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_112 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 37704762 - 37704454
Alignment:
| Q |
9 |
aatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagatt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704762 |
aatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagatt |
37704663 |
T |
|
| Q |
109 |
ccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704662 |
ccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat |
37704563 |
T |
|
| Q |
209 |
tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaac |
308 |
Q |
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| T |
37704562 |
tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaac |
37704463 |
T |
|
| Q |
309 |
ctttttggt |
317 |
Q |
| |
|
||||||||| |
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| T |
37704462 |
ctttttggt |
37704454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 37699283 - 37698974
Alignment:
| Q |
13 |
ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattc |
109 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
37699283 |
ttattttcttcattttaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc |
37699184 |
T |
|
| Q |
110 |
caactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat |
208 |
Q |
| |
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||||||| ||||||||||||||| |||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37699183 |
caactttagtgctaattacgttcgaaaagtcttggttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatat |
37699084 |
T |
|
| Q |
209 |
tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtca |
306 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| ||| |
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| T |
37699083 |
tgttgccaaatgtcatatcagtatacggttatgaaaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactca |
37698984 |
T |
|
| Q |
307 |
acctttttgg |
316 |
Q |
| |
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| |||||||| |
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|
| T |
37698983 |
aactttttgg |
37698974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 37437823 - 37437520
Alignment:
| Q |
13 |
ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattc |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
37437823 |
ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc |
37437724 |
T |
|
| Q |
110 |
caactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat |
208 |
Q |
| |
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|||||| ||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
37437723 |
caactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatat |
37437628 |
T |
|
| Q |
209 |
tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaac |
308 |
Q |
| |
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||||||||| |||||||||| |||| | |||||||||||| ||||| | |||| ||||||||| |||||| |||||| |||||||||||||||||| |
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| T |
37437627 |
tgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcaga |
37437529 |
T |
|
| Q |
309 |
ctttttggt |
317 |
Q |
| |
|
||||||||| |
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|
| T |
37437528 |
ctttttggt |
37437520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 69 - 317
Target Start/End: Complemental strand, 37698864 - 37698636
Alignment:
| Q |
69 |
taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag |
163 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||| |||||||| ||||| |||||||| |
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| T |
37698864 |
taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag |
37698765 |
T |
|
| Q |
164 |
tttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaat |
263 |
Q |
| |
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||||| ||||||||||||||| |||||| | |||||||||||||||| |||||||||| |||| | | |||||||| |
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|
| T |
37698764 |
tttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaat |
37698690 |
T |
|
| Q |
264 |
aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
317 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
37698689 |
aagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 16840923 - 16841109
Alignment:
| Q |
13 |
ttattttcttcatttcaggtgtat----ttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaat |
102 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |||| ||| |||||||| ||||||||||||||||||||||||| ||||||||| ||| |
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| T |
16840923 |
ttattttcttcatttcaggtgtatatatttttaagcaaattattcattgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaat |
16841022 |
T |
|
| Q |
103 |
aagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
189 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||| | |||||||||||||| |||| |
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| T |
16841023 |
aagattccaactta-gtgctaattacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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