View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_low_114 (Length: 339)
Name: NF6864A_low_114
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_114 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 4 - 325
Target Start/End: Original strand, 47680604 - 47680932
Alignment:
| Q |
4 |
agcagagaatgaaggacctacatgcagtgacagcaaggcatggggggctaccctaaag---------gatggaaaagacaggattcgaatttttaaacac |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47680604 |
agcagagaatgaaggacctacatgcagtgacagcaaggcatggggggctaccctaaagaaaagcaaggatggaaaagacaggattcgaatttttaaacac |
47680703 |
T |
|
| Q |
95 |
agaaaccaattgtgttgtgacaccctaaccacccatcatgtttgaaaaaccgagacacaaaccaattgcgattattagggtttgactcaattcattgatg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47680704 |
agaaaccaattgtgttgtgacaccctaaccacccatcatgtttgaaaaaccgagacacaaaccaattgcgtttattagggtttgactcaattcattgatg |
47680803 |
T |
|
| Q |
195 |
atcatcaatactatacaacaataatggatttcttggcgatagtgtataatgtagctattactttgtacatccatgtatatttggtagtatatggtattgc |
294 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47680804 |
atcatcaatac--tacaacaataatggattttttggcgatagtgtataatgtagctattactttgtacatccatgtataattggtagtatatggtattgc |
47680901 |
T |
|
| Q |
295 |
atttatatttggaattaatgatacatattat |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47680902 |
atttatatttggaattaatgatacatattat |
47680932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University