View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_116 (Length: 336)
Name: NF6864A_low_116
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_116 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 7246324 - 7246474
Alignment:
| Q |
7 |
gtaattgattgagagtaatagtaagggtttaaagaagagttttgataggattgtgaaaaagattgtgactgatcatgacaagccatggatgaagtagaga |
106 |
Q |
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| T |
7246324 |
gtaattgattgagagtaatagtaagggtttaaagaagagttttggtaggattgtgaaaaagattgtgactgatcatgacaagccatggatgaagtagaga |
7246423 |
T |
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| Q |
107 |
aagggaaagaagaaggtgagtttatgctgctgctgttgttgttcaaggaga |
157 |
Q |
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| T |
7246424 |
aagggaaagaagaaggtgagtttatgctgctgctgttgttgttcaaggaga |
7246474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 215 - 333
Target Start/End: Original strand, 7246532 - 7246650
Alignment:
| Q |
215 |
aagaagaaactactagttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagca |
314 |
Q |
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| T |
7246532 |
aagaagaaactactagttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagca |
7246631 |
T |
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| Q |
315 |
tctccatttcttgccatct |
333 |
Q |
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| T |
7246632 |
tctccatttcttgccatct |
7246650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 13137222 - 13137278
Alignment:
| Q |
231 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactt |
287 |
Q |
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| T |
13137222 |
ttccacaagctttcttgaacgatttcgacctctgtgcatgtgacgttcacaatactt |
13137278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 52052075 - 52051973
Alignment:
| Q |
231 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca |
330 |
Q |
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| T |
52052075 |
ttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgaatctggatatgcttcttttgaacatctccatttctttcca |
52051976 |
T |
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| Q |
331 |
tct |
333 |
Q |
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||| |
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| T |
52051975 |
tct |
52051973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 18199801 - 18199903
Alignment:
| Q |
231 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca |
330 |
Q |
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| T |
18199801 |
ttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctccatttttttcca |
18199900 |
T |
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| Q |
331 |
tct |
333 |
Q |
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||| |
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| T |
18199901 |
tct |
18199903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 42092016 - 42091957
Alignment:
| Q |
229 |
agttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtacttt |
288 |
Q |
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| T |
42092016 |
agttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttt |
42091957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 399189 - 399100
Alignment:
| Q |
231 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctcca |
320 |
Q |
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| T |
399189 |
ttccacaggctttcttgaacggttgcggccacggtgcatgtggcgctcacagtacttggagtctgggtatgcttccttcgagcacctcca |
399100 |
T |
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