View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_120 (Length: 333)
Name: NF6864A_low_120
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_120 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 30850791 - 30851108
Alignment:
| Q |
19 |
ttttaaatagtgataaaagctatctagcaaagacactttagattgaaggtgtgtctggtgtctgacacgttatgggatctaatatcgacacacactgaca |
118 |
Q |
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| T |
30850791 |
ttttaaatagtgacaaaagctatctagcaaagacactttagattgaaggtgtgtctcgtgtctgacacgttatggggtctaatatcgacacacactgaca |
30850890 |
T |
|
| Q |
119 |
aatgtagttaccattggtgtctaca----tgtcagttgtgtgtcaatgtttgagtatattttagtgcatcggcatacaccgacaaatatagctaccattg |
214 |
Q |
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| T |
30850891 |
aatgtagttaccattggtgtctacatacatgtcagtcctgtgtcaatgtttgagtatattttagtgcatcagcatacactgacaaatatagttaccattg |
30850990 |
T |
|
| Q |
215 |
gtgtctacgtgtcagtgttgtgtcaatgtttgagtatgtattaatactttctaaagtcaaagtataagtcttattgaatgtgatgctttggtttcatgtc |
314 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30850991 |
gtgtctacgtgttagtgttgtgtcaatgtttgagtatgtattagtactttctaaagtcaaagtataagtcttattgaatgtgatgctttggtttcatgtc |
30851090 |
T |
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| Q |
315 |
attcctttcggttctttg |
332 |
Q |
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|||||||||||||||||| |
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| T |
30851091 |
attcctttcggttctttg |
30851108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 4323836 - 4323865
Alignment:
| Q |
50 |
gacactttagattgaaggtgtgtctggtgt |
79 |
Q |
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| T |
4323836 |
gacactttagattgaaggtgtgtctggtgt |
4323865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 34489321 - 34489285
Alignment:
| Q |
50 |
gacactttagattgaaggtgtgtctggtgtctgacac |
86 |
Q |
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| T |
34489321 |
gacactttagattgaaggtgtgtctcgtgtctgacac |
34489285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 21968897 - 21968862
Alignment:
| Q |
53 |
actttagattgaaggtgtgtctggtgtctgacacgt |
88 |
Q |
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| T |
21968897 |
actttagattgaaggcgtgtctggtgtctgacacgt |
21968862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 39424608 - 39424572
Alignment:
| Q |
50 |
gacactttagattgaaggtgtgtctggtgtctgacac |
86 |
Q |
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|||||||||||||| |||||||| ||||||||||||| |
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| T |
39424608 |
gacactttagattggaggtgtgtttggtgtctgacac |
39424572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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