View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_123 (Length: 332)
Name: NF6864A_low_123
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_123 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 4141448 - 4141264
Alignment:
| Q |
1 |
aagaagagtcggaaatgtgggctttgagcaatttggggaagggttttaacaacttatctgtttgtttagtaagagcatcaagagtatgattatcatcatt |
100 |
Q |
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| T |
4141448 |
aagaagagtcggaaatgtgggctttgagcaatttggggaagggttttaacaacttgtctctttgtttagtaagagcatcaagagtatcattatcatcatt |
4141349 |
T |
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| Q |
101 |
ggtggtgacattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagctttagaatatga |
185 |
Q |
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| T |
4141348 |
ggtggtgacattttttatgagcaaatcctcaagaagtggacatacagagagaatctgaataagatatttaagctttagaaaatga |
4141264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 197 - 324
Target Start/End: Complemental strand, 4140706 - 4140579
Alignment:
| Q |
197 |
atttgtgaggagggcaaatatgagaggatgtgatgaagtatttcatccggtaaatcgctgatactgtctgtaccttttcttgttggtgccattgatagtt |
296 |
Q |
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| T |
4140706 |
atttgtgaggagggcaaaaatgagaggatgtgatggagtatttcatccggtaaatcgctgatcctgtctgttccttttcttgttggtgccatggatagtt |
4140607 |
T |
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| Q |
297 |
aagtttctttctttattgattgaatgaa |
324 |
Q |
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| T |
4140606 |
aagtttctttctttgttgattgaatgaa |
4140579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 3855175 - 3855350
Alignment:
| Q |
1 |
aagaagagtcggaaatgtgggctttgagcaatttggggaagggttttaacaacttatctgtttgtttagtaagagcatcaagagtatgattatcatcatt |
100 |
Q |
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| T |
3855175 |
aagaagagtcagaaatgtgggatttgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcattatcatcatg |
3855274 |
T |
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| Q |
101 |
ggtggtgacattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagcttt |
176 |
Q |
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|||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
3855275 |
ggtgctgacattttttatgagtaaatcctcgagaaatggacatacagagagaatcttaataagatatttaagcttt |
3855350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 1882095 - 1882018
Alignment:
| Q |
108 |
acattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagctttagaatatga |
185 |
Q |
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| T |
1882095 |
acatttttgatgagtaaatcctcaagaagcggacatacagagagaatcttaataagaaattgaagctttagaaaatga |
1882018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 41541889 - 41541812
Alignment:
| Q |
108 |
acattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagctttagaatatga |
185 |
Q |
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| T |
41541889 |
acatttttgatgagtaaatcctcaagaagcggacatacggagagaatcttaataagaaattgaagctttggaaaatga |
41541812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 41541990 - 41541943
Alignment:
| Q |
1 |
aagaagagtcggaaatgtgggctttgagcaatttggggaagggtttta |
48 |
Q |
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| T |
41541990 |
aagaagagtcagaaatgtgggctttgagcaaattggggaagggtttta |
41541943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 44636883 - 44636942
Alignment:
| Q |
208 |
gggcaaatatgagaggatgtgatgaagtatttcatccggtaaatcgctgatactgtctgt |
267 |
Q |
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||||||||||||||||||||||| | ||||||||| |||||||||||||| |||||||| |
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| T |
44636883 |
gggcaaatatgagaggatgtgatatattatttcatcgggtaaatcgctgatcctgtctgt |
44636942 |
T |
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