View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_124 (Length: 331)
Name: NF6864A_low_124
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_124 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 2838821 - 2838504
Alignment:
| Q |
14 |
atggacatcagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
113 |
Q |
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| T |
2838821 |
atggaaatgagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
2838722 |
T |
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| Q |
114 |
agaatctctttttggaaaaggaatttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgt |
213 |
Q |
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| T |
2838721 |
agaatctctttttggaaaaggaacttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgt |
2838622 |
T |
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| Q |
214 |
gaagaaagattgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagtgtgcaatgatatgcatagatccttttatgat |
313 |
Q |
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| T |
2838621 |
gaagaaagattgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgat |
2838522 |
T |
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| Q |
314 |
actgagtctgatgttctt |
331 |
Q |
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| T |
2838521 |
actgagtctgatgttctt |
2838504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 2842922 - 2842784
Alignment:
| Q |
14 |
atggacatcagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
113 |
Q |
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| T |
2842922 |
atggaaatgagacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaggg |
2842823 |
T |
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| Q |
114 |
agaatctctttttggaaaaggaatttgaaagttataggc |
152 |
Q |
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| T |
2842822 |
aaaatctttttttggaaaaggaacttgaaacttttaggc |
2842784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 2842573 - 2842530
Alignment:
| Q |
288 |
atgatatgcatagatccttttatgatactgagtctgatgttctt |
331 |
Q |
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| T |
2842573 |
atgatttgcatagctccttttatgatactgagtctgatgttctt |
2842530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 2842705 - 2842671
Alignment:
| Q |
156 |
cactttcatttgaaacttgtgatgatccatcacag |
190 |
Q |
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| T |
2842705 |
cactttcatttgaaacatgtgatgatccatcacag |
2842671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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