View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_125 (Length: 330)
Name: NF6864A_low_125
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_125 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 46 - 324
Target Start/End: Original strand, 32524677 - 32524959
Alignment:
| Q |
46 |
agttaatttttcattatgaaaaacaatgctaaatatagtaggaatatattgtcgtagaatagatatgaaggatgtgtgtacgttaataactaactattct |
145 |
Q |
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| T |
32524677 |
agttaattttccattatgaaaaacaatgctaaatatagtaggaatatattgtcgtagaatagatatgaaggatgtgtgtacgttaataactaactattct |
32524776 |
T |
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| Q |
146 |
cctaatccatttctactttca--ttttgttaacttccatttaaagaccctttaacgannnnnnnnnnnnnnnnnnnngtaaaattaagtaactacccact |
243 |
Q |
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| T |
32524777 |
cctaatccatttctactttcattttttgttaacttccatttaaagaccctttaacgattttttctcctttttgttttgtaaaattaagtaactacccact |
32524876 |
T |
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| Q |
244 |
aactc--ataaaaaatgcacgttaaggcataaccaacttctttgtattgattgtagttaccaaaaataaaacttcttcgtatt |
324 |
Q |
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| T |
32524877 |
atctcatataaaaaatgcacgttaaggcataaccaacttctttgtattgattgtagttaccaaaaataaaacttcttcgtatt |
32524959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32524605 - 32524666
Alignment:
| Q |
1 |
gttagatatgaagctgatttttcggaagtaccctttgcgtgtgttagttaatttttcattat |
62 |
Q |
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| T |
32524605 |
gttagatatgaacctgatttttcggaagtaccctttgcgtgtgttagttaatttttcattat |
32524666 |
T |
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