View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_127 (Length: 330)
Name: NF6864A_low_127
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_127 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 3683251 - 3682934
Alignment:
| Q |
1 |
ggattggtacagaggctatgtagaaaaactgagggtctgtgatagtatgctttagaatcaccacagcacaaaaagcaagcaatattcccaacaagatctt |
100 |
Q |
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| T |
3683251 |
ggattgatccagaggctatgtagaaaaaatgagggtctgtgatagtatgctttagaatcaccacagcacaaaaagcaagcaatattcccaacaagatctt |
3683152 |
T |
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| Q |
101 |
cactttcattgacctcttactcaaccatccaatcaaaacattcactgcaaaatccctctttgatcccattttgttgacaaaaaactaaaattcagcaacc |
200 |
Q |
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| T |
3683151 |
cactttcattgacctcttactcaaccatccaatcaaaacattcactgcaaaatccctctttgatcccattttgttgacaaaaaactaaaattcagcaacc |
3683052 |
T |
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| Q |
201 |
aaaatagggaggggttttctttttcttctcaagaatttgtatttgtgctcacacaatattttggagtggtgtagttcgattgagtagttgtagtgattgg |
300 |
Q |
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| T |
3683051 |
aaaataggg----gtttt--ttttcttctcaagaatttgtatttgtgctcacacaatattttggagtggtgtagttcgattgagtaattgtagtgattgg |
3682958 |
T |
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| Q |
301 |
agaatgatgtattgatatggcgtg |
324 |
Q |
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| T |
3682957 |
agaatgatgtattgatatggcgtg |
3682934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 172
Target Start/End: Complemental strand, 3661439 - 3661277
Alignment:
| Q |
10 |
cagaggctatgtagaaaaactgagggtctgtgatagtatgctttagaatcaccacagcacaaaaagcaagcaatattcccaacaagatcttcactttcat |
109 |
Q |
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| T |
3661439 |
cagaggctttgaagaaaaaatttggctctctgatagtatgctttagaaccacaatagcacaaaaagcaagcaatattcccaaaaagatcttcactttcat |
3661340 |
T |
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| Q |
110 |
tgacctcttactcaaccatccaatcaaaacattcactgcaaaatccctctttgatcccatttt |
172 |
Q |
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| T |
3661339 |
tgatcttttcctcagccatccaaacataacattcaccggtgaatccctctttgatcccatttt |
3661277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 58 - 204
Target Start/End: Complemental strand, 3666291 - 3666146
Alignment:
| Q |
58 |
tcaccacagcacaaaaagcaagcaatattcccaacaagatcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgcaaaatccct |
157 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| | | ||| |||||||| | | ||||| | |
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| T |
3666291 |
tcaccacagcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgacctattcctcaaccagctagacaatacattcacgggagaatcctt |
3666192 |
T |
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| Q |
158 |
ctttgatcccattttgttgacaaaaaactaaaattcagcaaccaaaa |
204 |
Q |
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| T |
3666191 |
ctttgatcccattttg-tgaccaaaaataaaaatctagcaaccaaaa |
3666146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 3675765 - 3675641
Alignment:
| Q |
50 |
ctttagaatcaccacagcacaaaaagcaagcaatattcccaacaagatcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgca |
149 |
Q |
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||||||| ||||| |||| |||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| | |||||||||||| | |
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| T |
3675765 |
ctttagagccaccaaagcagaaaatgcaagcaatattcccaaaaagattttcactttcattgatctcttcctcaaccatatagacaaaacattcacaggg |
3675666 |
T |
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| Q |
150 |
aaatccctctttgatcccattttgt |
174 |
Q |
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|||||||||||||||||||||||| |
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| T |
3675665 |
gaatccctctttgatcccattttgt |
3675641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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