View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_128 (Length: 329)

Name: NF6864A_low_128
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_128
NF6864A_low_128
[»] chr4 (10 HSPs)
chr4 (19-174)||(37179999-37180154)
chr4 (19-174)||(37181583-37181738)
chr4 (19-174)||(37189700-37189855)
chr4 (19-170)||(37187682-37187833)
chr4 (237-329)||(37180220-37180312)
chr4 (237-329)||(37189542-37189634)
chr4 (122-170)||(38704220-38704268)
chr4 (237-309)||(37181445-37181517)
chr4 (238-325)||(37187901-37187988)
chr4 (237-309)||(38704293-38704369)
[»] chr5 (2 HSPs)
chr5 (34-152)||(27096701-27096816)
chr5 (34-152)||(27103004-27103119)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 37179999 - 37180154
Alignment:
Q  19 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37179999 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37180098  T
Q  119 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180099 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37180154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 37181738 - 37181583
Alignment:
Q  19 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181738 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37181639  T
Q  119 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181638 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37181583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 37189855 - 37189700
Alignment:
Q  19 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189855 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37189756  T
Q  119 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189755 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37189700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 37187682 - 37187833
Alignment:
Q  19 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||    
T  37187682 gaagtggctgctggcaatggtggaatgttgagagatggaattgttggaaaatttgtaggaaagctaggaagtggtggcatagtgagtttaggcatagaag 37187781  T
Q  119 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 170  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37187782 ggatagtaggcaatggaggaagatttccctgaggcatatttggaattgaagg 37187833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 37180220 - 37180312
Alignment:
Q  237 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagttt 329  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180220 caaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagttt 37180312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 237 - 329
Target Start/End: Complemental strand, 37189634 - 37189542
Alignment:
Q  237 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagttt 329  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37189634 caaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatcaaggatttgaatattgccattgatagttt 37189542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 38704220 - 38704268
Alignment:
Q  122 tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704220 tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 38704268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 37181517 - 37181445
Alignment:
Q  237 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttg 309  Q
    ||||||||| |||||||||||||||||| |||| ||||| ||||| |||||||||||||  ||||||||||||    
T  37181517 caaaagatggcgagcttctaggctcatgcttgacattgtgacaacaagaagtaaagttgcaatgaaggatttg 37181445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 37187901 - 37187988
Alignment:
Q  238 aaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgata 325  Q
    |||||||| |||||||||||||||||| |||| || |||||||| |||||||||| | ||||||||||||||  |  |||||||||||    
T  37187901 aaaagatggcgagcttctaggctcatgcttgacatggtcacaacaagaagtaaagctatgatgaaggatttgcttgatgccattgata 37187988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 38704293 - 38704369
Alignment:
Q  237 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagta----aagttgtgatgaaggatttg 309  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| |||||||    |||||||||| |||||||||    
T  38704293 caaaagatgacgagcttctaggttcatgcttgacattgtcacaacaagaagtaaattaagttgtgattaaggatttg 38704369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 27096816 - 27096701
Alignment:
Q  34 aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg 133  Q
    |||||||||| |||||||||||||| |||||||   || |||||||  || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27096816 aatggtggaaagttgagagatggaagtgttgga---ttggtaggaatgctaggaagtggtggcatagtgagcttaggcatagaagggatagtaggcaatg 27096720  T
Q  134 gaggaagatttccttgagg 152  Q
    |||||| ||| ||||||||    
T  27096719 gaggaacattaccttgagg 27096701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 27103119 - 27103004
Alignment:
Q  34 aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg 133  Q
    |||||||||| |||||||||||||| |||||||   || || ||||  || |||||||||||||||||||| |||||||  |||||||| ||||||||||    
T  27103119 aatggtggaaagttgagagatggaagtgttgga---ttggttggaatgctaggaagtggtggcatagtgagcttaggcactgaagggatggtaggcaatg 27103023  T
Q  134 gaggaagatttccttgagg 152  Q
    |||||| ||| ||||||||    
T  27103022 gaggaacattaccttgagg 27103004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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