View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_131 (Length: 327)

Name: NF6864A_low_131
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_131
NF6864A_low_131
[»] chr3 (3 HSPs)
chr3 (13-293)||(2145133-2145413)
chr3 (121-245)||(48032261-48032385)
chr3 (174-228)||(12699558-12699612)
[»] chr1 (2 HSPs)
chr1 (13-297)||(29466040-29466319)
chr1 (37-255)||(48562506-48562722)
[»] chr7 (1 HSPs)
chr7 (13-255)||(28301345-28301587)
[»] chr6 (3 HSPs)
chr6 (13-255)||(10144016-10144258)
chr6 (158-288)||(30898964-30899094)
chr6 (242-283)||(27984544-27984585)
[»] scaffold0075 (1 HSPs)
scaffold0075 (13-255)||(12697-12939)
[»] chr2 (4 HSPs)
chr2 (13-255)||(12433439-12433681)
chr2 (105-249)||(13016160-13016294)
chr2 (52-160)||(1095468-1095576)
chr2 (213-285)||(8851067-8851139)
[»] chr8 (4 HSPs)
chr8 (37-288)||(44605264-44605519)
chr8 (37-244)||(20307073-20307273)
chr8 (37-244)||(21093706-21093906)
chr8 (213-288)||(24944940-24945015)
[»] chr4 (3 HSPs)
chr4 (105-293)||(34495003-34495191)
chr4 (162-250)||(4699738-4699826)
chr4 (247-293)||(29011465-29011511)
[»] scaffold0006 (1 HSPs)
scaffold0006 (105-249)||(281101-281245)
[»] chr5 (2 HSPs)
chr5 (163-284)||(32025882-32026003)
chr5 (189-253)||(41483534-41483598)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 2145133 - 2145413
Alignment:
Q  13 agatgaacaaagttataaagctgaagaagaagaaatttaatgaagaggttgtatttgtaatttaatcattccataaataaagttattagtggttccattc 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2145133 agatgaacaaagttgtaaagctgaagaagaagaaatttaatgaagaggttgtatttgtaatttaatcattcaataaataaagttattagtggttccattc 2145232  T
Q  113 cattccacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatccttttaatgac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2145233 cattccacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattaggttccattccattccatccttttaatgac 2145332  T
Q  213 aatccaaacaatggaactgtaatttattccattccattccatcccatttcatctcaaaccaccaatccaaacataggctaa 293  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  2145333 aatccaaacaatggaacagtaatttattccattccattccatcccattccatctcaaaccaccaatccaaacatagcctaa 2145413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 48032261 - 48032385
Alignment:
Q  121 ccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatccttttaatgacaatccaaa 220  Q
    ||||||| |||||||  |||||   ||||||||  ||||| ||||||||||| |||  |||| |||  ||||||| |||||||||||||||  || ||||    
T  48032261 ccaaattagagggtaagcaaaaccaaagtaagtggtggaacatgatggaatgcatgttattgagttttattccatcccatccttttaatgattattcaaa 48032360  T
Q  221 caatggaactgtaatttattccatt 245  Q
    ||||| ||   ||||||||||||||    
T  48032361 caatgaaatcttaatttattccatt 48032385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 12699558 - 12699612
Alignment:
Q  174 atgccattgggttccattccattccatccttttaatgacaatccaaacaatggaa 228  Q
    ||||||||  ||||||||||||  ||||||||||||||| ||| |||||||||||    
T  12699558 atgccattaagttccattccatcgcatccttttaatgactatctaaacaatggaa 12699612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 29466040 - 29466319
Alignment:
Q  13 agatgaacaaagttataaagctgaagaagaagaaatttaatgaagaggttgtatttgtaatttaatcattccataaataaagttattagtggttccattc 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29466040 agatgaacaaagttgtaaagctgaagaagaagaaatttaatgaagaggttgtatttgtaatttaatcattcaataaataaagttattagtggttccattc 29466139  T
Q  113 cattccacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatccttttaatgac 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29466140 cattcgacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccattcttttaatgac 29466239  T
Q  213 aatccaaacaatggaactgtaatttattccattccattccatcccatttcatctcaaaccaccaatccaaacataggctaatggt 297  Q
    |||||||||||||||||  ||||||     |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  29466240 aatccaaacaatggaacaataattt-----attccattccatcccattccatctcaaaccaccaatccaaacatagcctaatggt 29466319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 37 - 255
Target Start/End: Complemental strand, 48562722 - 48562506
Alignment:
Q  37 agaagaagaaatttaatgaaga---ggttgtatttgtaatttaatcattccataaataaagttattagtggttccattccattccacccaaattggaggg 133  Q
    |||||||||||| |||||||||   ||||||||||||||||||||||||  | |||||||||  | ||||||||||||||      || || ||||||||    
T  48562722 agaagaagaaatataatgaagacgaggttgtatttgtaatttaatcattgaacaaataaagtagtcagtggttccattccg-----cctaacttggaggg 48562628  T
Q  134 tagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatccttttaatgacaatccaaacaatggaactgta 233  Q
     | |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||| |||||||||||||||||||  |     
T  48562627 gaaccaaaatgtaagtaagtaatggaatatgatggaatgaatatcattgggttccattccattctatccttttaataacaatccaaacaatggaacattg 48562528  T
Q  234 atttattccattccattccatc 255  Q
    ||||||| ||||||||||||||    
T  48562527 atttatttcattccattccatc 48562506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 28301345 - 28301587
Alignment:
Q  13 agatgaacaaagttataaagctgaagaagaagaaatttaatgaagaggttgtatttgtaatttaatcattccataaataaagttattagtggttccattc 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28301345 agatgaacaaagttgtaaagctgaagaagaagaaatttaatgaagaggttgtatttgtaatttaatcattcaataaataaagttattagtggttccattc 28301444  T
Q  113 cattccacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatccttttaatgac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28301445 cattccacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatccttttaatgac 28301544  T
Q  213 aatccaaacaatggaactgtaatttattccattccattccatc 255  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  28301545 aatccaaacaatggaacagtaatttattccatcccattccatc 28301587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 10144258 - 10144016
Alignment:
Q  13 agatgaacaaagttataaagctgaagaagaagaaatttaatgaagaggttgtatttgtaatttaatcattccataaataaagttattagtggttccattc 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10144258 agatgaacaaagttgtaaagctgaagaagaagaaatttaatgaagaggttgtatttgtaatttaatcattcaataaataaagttattagtggttccattc 10144159  T
Q  113 cattccacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatccttttaatgac 212  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  10144158 cattccacccaaattggagggtaaccaaaatgtaagtaagtaatggaatatgatagaatgaatgtcattgggttccattccattccatccttttaatgac 10144059  T
Q  213 aatccaaacaatggaactgtaatttattccattccattccatc 255  Q
    ||||||||||||||||||| |||||||||||| ||||||||||    
T  10144058 aatccaaacaatggaactggaatttattccatcccattccatc 10144016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 288
Target Start/End: Complemental strand, 30899094 - 30898964
Alignment:
Q  158 gaatatgatggaatgaatgccattgggttccattccattccatccttttaatgacaatccaaacaatggaactgtaatttattccattccattccatccc 257  Q
    |||| |||||||||| || ||||||  | | |||| ||||||| |||||||| |  || |||||||||||||  ||| |||||||||||||||  |||||    
T  30899094 gaatgtgatggaatgcataccattgaatactattctattccattcttttaataagtatgcaaacaatggaacactaacttattccattccattttatccc 30898995  T
Q  258 atttcatctcaaaccaccaatccaaacatag 288  Q
    |||| |||||   ||| |||| |||||||||    
T  30898994 atttgatctctttccatcaattcaaacatag 30898964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 27984585 - 27984544
Alignment:
Q  242 cattccattccatcccatttcatctcaaaccaccaatccaaa 283  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||    
T  27984585 cattccattccatcccattccatctcaaaccactaattcaaa 27984544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 12697 - 12939
Alignment:
Q  13 agatgaacaaagttataaagctgaagaagaagaaatttaatgaagaggttgtatttgtaatttaatcattccataaataaagttattagtggttccattc 112  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12697 agatgaacaaagttgtaaagctgaagaaaaagaaatttaatgaagaggttgtatttgtaatttaatcattcaataaataaagttattagtggttccattc 12796  T
Q  113 cattccacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatccttttaatgac 212  Q
    |||||||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12797 cattccacccaaattaaagggtaaccaaaatgtaattaagtaatggaatatgatggaatgaataccattgggttccattccattccatccttttaatgac 12896  T
Q  213 aatccaaacaatggaactgtaatttattccattccattccatc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12897 aatccaaacaatggaactgtaatttattccattccattccatc 12939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 12433439 - 12433681
Alignment:
Q  13 agatgaacaaagttataaagctgaagaagaagaaatttaatgaagaggttgtatttgtaatttaatcattccataaataaagttattagtggttccattc 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  12433439 agatgaacaaagttgtaaagctgaagaagaagaaatttaatgaagaggttgtatttgtaatttaatcattcaataaatatagttattagtggttccattc 12433538  T
Q  113 cattccacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatccttttaatgac 212  Q
    |||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12433539 cattccacccaaattgaagggtaaccagaatgtaagtaagtaatggaatatgatggaatgaataccattgggttccattccattccatccttttaatgac 12433638  T
Q  213 aatccaaacaatggaactgtaatttattccattccattccatc 255  Q
    ||||||| |||||||||||||||||||||||| ||||||||||    
T  12433639 aatccaagcaatggaactgtaatttattccatcccattccatc 12433681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 249
Target Start/End: Complemental strand, 13016294 - 13016160
Alignment:
Q  105 ttccattccattccacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatcctt 204  Q
    ||||||||||||||| |||||||||||||||  |||||||  ||||||| ||||||||           ||  ||||| |||||||||||| ||||||||    
T  13016294 ttccattccattccatccaaattggagggtaagcaaaatgagagtaagtgatggaatac----------atttcattgagttccattccatcccatcctt 13016205  T
Q  205 ttaatgacaatccaaacaatggaactgtaatttattccattccat 249  Q
    ||||| || |||||||||||| || | ||||||||||||||||||    
T  13016204 ttaattactatccaaacaatgaaattttaatttattccattccat 13016160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 1095468 - 1095576
Alignment:
Q  52 atgaagaggttgtatttgtaatttaatcattccataaataaagttattagtggttccattccattccacccaaattggagggtagccaaaatgtaagtaa 151  Q
    |||| |||||| ||||||||||||||| |    | ||||||||| ||||| | |||||||||||| | ||||||||| |||| | |||||||||| ||||    
T  1095468 atgatgaggttatatttgtaatttaataaccgtacaaataaagtaattagcgattccattccatttcgcccaaattgaagggcaaccaaaatgtatgtaa 1095567  T
Q  152 gtaatggaa 160  Q
     ||||||||    
T  1095568 ctaatggaa 1095576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 8851139 - 8851067
Alignment:
Q  213 aatccaaacaatggaactgtaattt-attccattccattccatcccatttcatctcaaaccaccaatccaaaca 285  Q
    |||||||||||||||| | | |||| |||||||  |||||||| ||||| ||||||||||||| ||||||||||    
T  8851139 aatccaaacaatggaa-tatcatttcattccatcacattccattccattccatctcaaaccactaatccaaaca 8851067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 37 - 288
Target Start/End: Complemental strand, 44605519 - 44605264
Alignment:
Q  37 agaagaagaaatttaatgaaga---ggttgtatttgtaatttaatcattccataaataaagttatta-gtggttccattccattccacccaaattggagg 132  Q
    |||||||||||| |||||||||   |||||||||||||||||| |||||  | |||||||  || || |||||||||||||||| |||||||||||||||    
T  44605519 agaagaagaaatgtaatgaagatgaggttgtatttgtaatttagtcattggacaaataaaaataataagtggttccattccatttcacccaaattggagg 44605420  T
Q  133 gtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatccttttaatgacaatccaaacaatggaactgt 232  Q
    | | ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  44605419 ggaaccaaaatgtaagtaagtaatggaatatgatgaaatggataccattgggttccattccattccatccttttaatgacaatccaaacaatggaacatt 44605320  T
Q  233 aatttattccattccattccatcccatttcatctcaaaccaccaatccaaacatag 288  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||    
T  44605319 aatttattccattccattccataccatctcatctcataccaccaatccaaacatag 44605264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 37 - 244
Target Start/End: Complemental strand, 20307273 - 20307073
Alignment:
Q  37 agaagaagaaatttaatgaaga---ggttgtatttgtaatttaatcattccataaataaagttattagtggttccattccattccacccaaattggaggg 133  Q
    |||||||||||| |||||||||   |||||||||||||||||| |||||  | ||||||| | || |||||||||||| |||||     |||||||||||    
T  20307273 agaagaagaaatgtaatgaagatgaggttgtatttgtaatttagtcattggacaaataaaataataagtggttccatttcattc-----aaattggaggg 20307179  T
Q  134 tagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatccttttaatgacaatccaaacaatggaactgta 233  Q
     | ||||||||| ||||||||||| ||||||||| |||  || | |||| ||||||||     |||||||||||| ||||||||||||||||||||  ||    
T  20307178 gaaccaaaatgtgagtaagtaatgaaatatgatgaaatagatacaattgagttccatt-----ccatccttttaacgacaatccaaacaatggaacatta 20307084  T
Q  234 atttattccat 244  Q
    |||||||||||    
T  20307083 atttattccat 20307073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 37 - 244
Target Start/End: Complemental strand, 21093906 - 21093706
Alignment:
Q  37 agaagaagaaatttaatgaaga---ggttgtatttgtaatttaatcattccataaataaagttattagtggttccattccattccacccaaattggaggg 133  Q
    |||||||||||| |||||||||   |||||||||||||||||| |||||  | ||||||| | || |||||||||||| |||||     |||||||||||    
T  21093906 agaagaagaaatgtaatgaagatgaggttgtatttgtaatttagtcattggacaaataaaataataagtggttccatttcattc-----aaattggaggg 21093812  T
Q  134 tagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatccttttaatgacaatccaaacaatggaactgta 233  Q
     | ||||||||| ||||||||||| ||||||||| |||  || | |||| ||||||||     |||||||||||| ||||||||||||||||||||  ||    
T  21093811 gaaccaaaatgtgagtaagtaatgaaatatgatgaaatagatacaattgagttccatt-----ccatccttttaacgacaatccaaacaatggaacatta 21093717  T
Q  234 atttattccat 244  Q
    |||||||||||    
T  21093716 atttattccat 21093706  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 24945015 - 24944940
Alignment:
Q  213 aatccaaacaatggaactgtaatt-tattccattccattccatcccatttcatctcaaaccaccaatccaaacatag 288  Q
    |||||||||||||||| | ||||| | | ||| |||||||||| ||||| |||| || |||||||||||||||||||    
T  24945015 aatccaaacaatggaa-tataattatgtaccactccattccattccattccatcacataccaccaatccaaacatag 24944940  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 105 - 293
Target Start/End: Original strand, 34495003 - 34495191
Alignment:
Q  105 ttccattccattccacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatcctt 204  Q
    ||||||||||||||| |||||||||||||||  ||| |||  ||||||| ||||||| |||||||||  || |||||| |||||||| ||| ||||||||    
T  34495003 ttccattccattccatccaaattggagggtaagcaatatgagagtaagtgatggaatgtgatggaatacattccattgagttccatttcatcccatcctt 34495102  T
Q  205 ttaatgacaatccaaacaatggaactgtaatttattccattccattccatcccatttcatctcaaaccaccaatccaaacataggctaa 293  Q
    ||||| || ||||||||||||||| | |||||||||||||||||| |||| ||||  |||  ||  ||| |||||||||||||| ||||    
T  34495103 ttaattactatccaaacaatggaattttaatttattccattccatcccattccatcccattgcattccatcaatccaaacatagcctaa 34495191  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 4699738 - 4699826
Alignment:
Q  162 atgatggaatgaatgccattgggttccattccattccatccttttaatgacaatccaaacaatggaactgtaatttattccattccatt 250  Q
    ||||||||||  || |||||| |||||| ||||||  |||||||||||||  | |||||||||||||   |||||||||||||| ||||    
T  4699738 atgatggaatatattccattgtgttccactccattttatccttttaatgaataaccaaacaatggaatcttaatttattccatttcatt 4699826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 29011511 - 29011465
Alignment:
Q  247 cattccatcccatttcatctcaaaccaccaatccaaacataggctaa 293  Q
    |||||||| ||||| ||||||||||||| ||||||||||||| ||||    
T  29011511 cattccattccattccatctcaaaccactaatccaaacatagcctaa 29011465  T

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Target: scaffold0006 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 249
Target Start/End: Complemental strand, 281245 - 281101
Alignment:
Q  105 ttccattccattccacccaaattggagggtagccaaaatgtaagtaagtaatggaatatgatggaatgaatgccattgggttccattccattccatcctt 204  Q
    ||||||||||||||| |||||||||||||||  ||| |||  ||||||| ||||||| |||||||||  || |||||| ||||||||||||  ||| |||    
T  281245 ttccattccattccatccaaattggagggtaagcaagatgagagtaagtgatggaatgtgatggaatacattccattgagttccattccatctcattctt 281146  T
Q  205 ttaatgacaatccaaacaatggaactgtaatttattccattccat 249  Q
    ||||| || ||||||||||| ||| | ||||||||||||||||||    
T  281145 ttaattactatccaaacaatagaattttaatttattccattccat 281101  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 284
Target Start/End: Complemental strand, 32026003 - 32025882
Alignment:
Q  163 tgatggaatgaatgccattgggttccattccattccatccttttaatgacaatccaaacaatggaactgtaatttattccattccattccatcccatttc 262  Q
    |||||||||  || |||||| ||||||||||| | ||  ||||||||||| ||||||||||||||| | |||||||||| ||| |||||||| ||||| |    
T  32026003 tgatggaatacataccattgagttccattccagtacactcttttaatgactatccaaacaatggaattttaatttattcaatttcattccattccattcc 32025904  T
Q  263 atctcaaaccaccaatccaaac 284  Q
    ||| || | || ||||||||||    
T  32025903 atcacatatcatcaatccaaac 32025882  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 41483598 - 41483534
Alignment:
Q  189 attccattccatccttttaatgacaatccaaacaatggaactgtaatttattccattccattcca 253  Q
    |||||||||||||||||||||||  ||||||||||| ||| | ||||||||||||||||||||||    
T  41483598 attccattccatccttttaatgaatatccaaacaatagaattttaatttattccattccattcca 41483534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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