View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_136 (Length: 322)
Name: NF6864A_low_136
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_136 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 25 - 316
Target Start/End: Original strand, 50442045 - 50442336
Alignment:
| Q |
25 |
ttccttaagaaattgaatacatacagataaaaatctcttaaccaagctagaaatttaaacttttattaatgtttggagatataaagttgaaacagtgcaa |
124 |
Q |
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| T |
50442045 |
ttccttaagaaattgaatacatactgataaaaatctcttaaccaagctagaaatttaaacttttattaatgtttggcgatataaagttgaaacagtgcaa |
50442144 |
T |
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| Q |
125 |
tctaaagttacatattgattatttttcatgttaattatcagaatggatggacggtacagaactagaagctagaagtaaaatttgtaaaatgtgatgttac |
224 |
Q |
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| T |
50442145 |
tctaaagttacatattgattatttttcatgttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttac |
50442244 |
T |
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| Q |
225 |
ttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaagaatcagatgctcaattcctgcctgagaagcatattcaatc |
316 |
Q |
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| T |
50442245 |
ttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaagaatcagatgctcaattcctgcctgcgaagcatattcaatc |
50442336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 184 - 316
Target Start/End: Original strand, 50447105 - 50447237
Alignment:
| Q |
184 |
aactagaagctagaagtaaaatttgtaaaatgtgatgttacttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaagaatcaga |
283 |
Q |
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| T |
50447105 |
aactataagctagaagtaaaatttgcaaaatgtgatgctacttaggaaaatggatgcatacttgtgcaaactagtttttgctgaagagccaagaatcaga |
50447204 |
T |
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| Q |
284 |
tgctcaattcctgcctgagaagcatattcaatc |
316 |
Q |
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| T |
50447205 |
tgctcaattcctacttgagaagcatattcaatc |
50447237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 316
Target Start/End: Original strand, 50421972 - 50422104
Alignment:
| Q |
184 |
aactagaagctagaagtaaaatttgtaaaatgtgatgttacttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaagaatcaga |
283 |
Q |
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|||||||||||| ||||||| |||| || ||| ||| |||||| | |||| |||| ||||| |||||| ||| | ||||||| |||||||||| || | |
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| T |
50421972 |
aactagaagctaaaagtaaactttgcaacatgctatgctacttataaaaatagatgcatactcaagcaaattagctcttgttgaggagccaagaaccaaa |
50422071 |
T |
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| Q |
284 |
tgctcaattcctgcctgagaagcatattcaatc |
316 |
Q |
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||||||||||| | | |||| |||||||||||| |
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| T |
50422072 |
tgctcaattcccgtccgagaggcatattcaatc |
50422104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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