View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_138 (Length: 318)

Name: NF6864A_low_138
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_138
NF6864A_low_138
[»] chr8 (3 HSPs)
chr8 (3-313)||(4146063-4146373)
chr8 (273-313)||(8018266-8018306)
chr8 (226-313)||(17654700-17654787)
[»] chr3 (1 HSPs)
chr3 (221-313)||(41430382-41430474)
[»] chr6 (1 HSPs)
chr6 (226-313)||(12734679-12734766)
[»] chr7 (1 HSPs)
chr7 (236-313)||(30269629-30269706)
[»] chr1 (2 HSPs)
chr1 (238-313)||(31525096-31525171)
chr1 (236-313)||(44269660-44269737)
[»] chr5 (2 HSPs)
chr5 (226-313)||(11106952-11107039)
chr5 (222-301)||(42367588-42367667)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 4146063 - 4146373
Alignment:
Q  3 gggtagattattcttgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttca 102  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146063 gggtagctttttcttgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttca 4146162  T
Q  103 atccttaagccctttagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146163 atccttaagccctttagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgt 4146262  T
Q  203 atagannnnnnngttaagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcag 302  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146263 atagatttttttgttaagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcag 4146362  T
Q  303 ctggaactttt 313  Q
    |||||||||||    
T  4146363 ctggaactttt 4146373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 8018306 - 8018266
Alignment:
Q  273 atcttttgaattttcttcggagtcatgcagctggaactttt 313  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  8018306 atcttttgaattttcttcggagtgatgcagctgaaactttt 8018266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 313
Target Start/End: Complemental strand, 17654787 - 17654700
Alignment:
Q  226 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 313  Q
    |||||| || |||||||||||||||||||| | |||| || |  || ||| ||||||||||||| ||||| ||||| ||| |||||||    
T  17654787 tgcctcatcaaactttgagtttctttgtcatgagtcttctccatcggatcgtttgaattttctttggagtgatgcatctgaaactttt 17654700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 41430474 - 41430382
Alignment:
Q  221 tttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 313  Q
    |||| |||||| || |||||||||||||||||||||| |||| ||| | || ||||||||||||||||||||||| |||||||||||||||||    
T  41430474 tttgctgcctcatcaaactttgagtttctttgtcacgagtctcctttggcggatcttttgaattttcttcggagtgatgcagctggaactttt 41430382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 12734679 - 12734766
Alignment:
Q  226 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 313  Q
    |||||| || |||||||||||||||| ||||| |||| || | ||| ||||||||||| ||||||||||| |||||||||||||||||    
T  12734679 tgcctcatcaaactttgagtttctttatcacgagtctcctccaacggatcttttgaatcttcttcggagtgatgcagctggaactttt 12734766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 313
Target Start/End: Complemental strand, 30269706 - 30269629
Alignment:
Q  236 aactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 313  Q
    |||||||||||||||||||||| |||| || | || |||||||| || |||||||||||| |||||||||||||||||    
T  30269706 aactttgagtttctttgtcacgagtctcctccaacaaatcttttcaactttcttcggagtgatgcagctggaactttt 30269629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 31525096 - 31525171
Alignment:
Q  238 ctttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 313  Q
    |||||||||||||||||||| |||| || | ||| ||||||||||| ||||||| ||| ||||||||||| |||||    
T  31525096 ctttgagtttctttgtcacgagtctcctccaacggatcttttgaatcttcttcgcagtgatgcagctggagctttt 31525171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 313
Target Start/End: Complemental strand, 44269737 - 44269660
Alignment:
Q  236 aactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 313  Q
    |||||||||||||||||||||| |||| || |   | ||||||||||| ||||||| ||| |||||||||||||||||    
T  44269737 aactttgagtttctttgtcacgagtctcctccagtggatcttttgaatcttcttcgaagtgatgcagctggaactttt 44269660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 11106952 - 11107039
Alignment:
Q  226 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 313  Q
    |||||| || |||| ||||||||||||| ||| |||| || | ||| ||||||||||| ||||||||||| ||| || ||||||||||    
T  11106952 tgcctcatcaaactctgagtttctttgttacgagtctcctccaacggatcttttgaatcttcttcggagtgatgtagttggaactttt 11107039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 42367667 - 42367588
Alignment:
Q  222 ttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgca 301  Q
    |||||| ||| || |||||| ||||||||||||| | |||| |||||||| ||||||| | ||||||| ||||| |||||    
T  42367667 ttgatgactcatcaaactttaagtttctttgtcaagagtcttcttcgacggatcttttaagttttctttggagtgatgca 42367588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University