View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_155 (Length: 306)
Name: NF6864A_low_155
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_155 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 116 - 298
Target Start/End: Original strand, 15265482 - 15265664
Alignment:
| Q |
116 |
ataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatgttgtagcaattacattaatttcattaccttta |
215 |
Q |
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| T |
15265482 |
ataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatgttgtaacaattacattaatttcattaccttta |
15265581 |
T |
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| Q |
216 |
tttcctcttctatcaattatgctactaagggtagtccttaaagcctttcttaatatatcataaaaccctatttcagtataatt |
298 |
Q |
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| T |
15265582 |
tttcctcttctatcaattatgctattaagggtagtccttaaagcctttcttaatacatcataaaaccctatttcagtgtaatt |
15265664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 116 - 294
Target Start/End: Original strand, 15256957 - 15257135
Alignment:
| Q |
116 |
ataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatgttgtagcaattacattaatttcattaccttta |
215 |
Q |
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| T |
15256957 |
ataaggcttagtctttggacaagcaccagctttatcccattcaccttcaaaatgagctggtgaaaatgttgtaactagtacatcaattttactaccttta |
15257056 |
T |
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| Q |
216 |
tttcctcttctatcaattatgctactaagggtagtccttaaagcctttcttaatatatcataaaaccctatttcagtat |
294 |
Q |
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| T |
15257057 |
tttcctctcctatcaattatactattaagagtagttcttaaagcctttctcaatacatcataaaacccaatttcagtat |
15257135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 15265372 - 15265417
Alignment:
| Q |
6 |
aatcttaaccttccaaattcattgcctttggctttagcagccacca |
51 |
Q |
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| T |
15265372 |
aatcttaaccttccaaattcattgcctttggctttagcagccacca |
15265417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 15287628 - 15287781
Alignment:
| Q |
116 |
ataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatgttgtagcaattacattaatttcattaccttta |
215 |
Q |
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|||||||||||| |||| ||||| |||||||||||||||| |||||||||||||| || | ||||||| || |||| |||| ||| ||| |||||| |
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| T |
15287628 |
ataaggcttagtctttgaacaagtaccagccttatcccaatcaccttcaaaatgagcaggtgaaaatgttttaacaatcacatctattctatttccttta |
15287727 |
T |
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| Q |
216 |
tttcctcttctatcaattatgctactaagggtagtccttaaagcctttcttaat |
269 |
Q |
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| T |
15287728 |
gcaactttcctctcaattatactattaagggtagtcctcaaagcctttcttaat |
15287781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 15284178 - 15284141
Alignment:
| Q |
228 |
tcaattatgctactaagggtagtccttaaagcctttct |
265 |
Q |
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| T |
15284178 |
tcaattatgctattaagggtagtccttaaagcctttct |
15284141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 44248382 - 44248452
Alignment:
| Q |
228 |
tcaattatgctactaagggtagtccttaaagcctttcttaatatatcataaaaccctatttcagtataatt |
298 |
Q |
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| T |
44248382 |
tcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataatt |
44248452 |
T |
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