View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_156 (Length: 306)

Name: NF6864A_low_156

Description: NF6864A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6864A_low_156

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 139; E-Value: 9e-73

Query Start/End: Original strand, 144 - 306

Target Start/End: Original strand, 48038707 - 48038869

Alignment:

Q	144	caacgaagaggttggtgggcaagggaaattagtctcagattttgatttctcctctaggtgttttcctttgcaaatatgcttgatacaccaaataaaatta	243	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48038707	caacgaagaggttggtgggcaagggaaattagtctcagattttgatttttcctctaggtgttttcctttgcaaatatgctttatacaccaaataaaatta	48038806	T

Q	244	aagcatggatatggagcatgccacatatcaatattcacaaaatgcattagtgcacttttttga	306	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|
T	48038807	tagcatggatatggagcatgccacatatcaatattcacgaaatgcattagtgcgcctttttga	48038869	T

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Target: chr4; HSP #2

Raw Score: 50; E-Value: 1e-19

Query Start/End: Original strand, 19 - 68

Target Start/End: Original strand, 48038582 - 48038631

Alignment:

Q	19	catcattgtccttgggtatccaattgcattggcaaggtacttcgtgatga	68	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48038582	catcattgtccttgggtatccaattgcattggcaaggtacttcgtgatga	48038631	T

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