View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_160 (Length: 303)
Name: NF6864A_low_160
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_160 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 7766499 - 7766780
Alignment:
| Q |
15 |
aataaaaagcgtgcgatgcaatttacagttgggattcttatttcggtgcaaaattctttctgagttttgaacctttttcatctttccctcttctttaaaa |
114 |
Q |
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| T |
7766499 |
aatagaaagcgtgcgatgcaatttacagttgagattcttatttcggtgcaaaattctttctgagttttgaac-tttttcatctttccctcttctttaaaa |
7766597 |
T |
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| Q |
115 |
cataccaaaaccctgattccctttcttctcttgttgtttaaacaaaacctatcaaatttttcactcaataaattcatctcttcaaaaccctaaccctaac |
214 |
Q |
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| T |
7766598 |
cataccaaaaccctaattccctttcttctcttgttgtttaaacaaaacctatcaaatttttcactcaataaattcatctcttcaaaaccctaaccctaac |
7766697 |
T |
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| Q |
215 |
cttctgattctttgaactaaatcttctaaaacctatcaaaacctcttcgaaaccctaaccttctcattctttttcatcaaaag |
297 |
Q |
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| T |
7766698 |
cttccgattctttgaactaaatcttctaaaacctatcaaaacctcttcgaaaccctaaccttctcattctttttcatcaaaag |
7766780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 7777241 - 7777374
Alignment:
| Q |
77 |
agttttgaacctttttcatctttccctcttctttaaaa-cataccaaaaccctgattccctttcttctcttgttgtttaaacaaaacctatcaaattttt |
175 |
Q |
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|||||||||||||||||||||||||||||||||| | ||| ||||||||| ||| |||||||||||| || |||||| ||||||||||||| |||| |
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| T |
7777241 |
agttttgaacctttttcatctttccctcttctttttcatcatctcaaaaccctaattacctttcttctctcattatttaaataaaacctatcaaaatttt |
7777340 |
T |
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| Q |
176 |
cactcaataaattcatctcttcaaaaccctaacc |
209 |
Q |
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| T |
7777341 |
cacttaagaatttcacctcttcgaaaccctaacc |
7777374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 7777355 - 7777389
Alignment:
| Q |
255 |
acctcttcgaaaccctaaccttctcattctttttc |
289 |
Q |
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| T |
7777355 |
acctcttcgaaaccctaaccttctcattctttttc |
7777389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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