View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_161 (Length: 301)

Name: NF6864A_low_161
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_161
NF6864A_low_161
[»] chr3 (3 HSPs)
chr3 (1-295)||(15513433-15513727)
chr3 (32-74)||(15514277-15514319)
chr3 (197-282)||(12767337-12767422)
[»] chr5 (4 HSPs)
chr5 (225-295)||(9962954-9963024)
chr5 (224-295)||(18398599-18398670)
chr5 (201-295)||(31536419-31536513)
chr5 (197-282)||(36289589-36289674)
[»] chr2 (7 HSPs)
chr2 (197-295)||(12670743-12670841)
chr2 (198-282)||(10633364-10633448)
chr2 (180-295)||(30481661-30481776)
chr2 (241-296)||(34557292-34557347)
chr2 (241-295)||(33710553-33710607)
chr2 (197-266)||(4422823-4422892)
chr2 (197-253)||(21488865-21488921)
[»] chr8 (6 HSPs)
chr8 (224-277)||(9030583-9030636)
chr8 (239-295)||(37616265-37616321)
chr8 (194-295)||(8238727-8238828)
chr8 (241-282)||(10340283-10340324)
chr8 (224-280)||(10340211-10340267)
chr8 (226-254)||(36203407-36203435)
[»] chr7 (5 HSPs)
chr7 (199-254)||(11329505-11329560)
chr7 (181-276)||(25690712-25690807)
chr7 (197-295)||(16780773-16780871)
chr7 (224-295)||(41195668-41195739)
chr7 (224-292)||(30357895-30357963)
[»] chr4 (5 HSPs)
chr4 (180-295)||(40423307-40423422)
chr4 (241-288)||(43115575-43115622)
chr4 (246-295)||(53449054-53449103)
chr4 (196-254)||(25844267-25844325)
chr4 (224-272)||(40421951-40421999)
[»] chr1 (3 HSPs)
chr1 (242-295)||(39126966-39127019)
chr1 (241-295)||(25485009-25485063)
chr1 (219-295)||(34062624-34062700)
[»] scaffold0110 (1 HSPs)
scaffold0110 (239-295)||(31363-31419)
[»] chr6 (1 HSPs)
chr6 (241-295)||(33617713-33617767)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 15513727 - 15513433
Alignment:
Q  1 atgaagtccattgaaatgccctttccatttccatcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattatt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513727 atgaggtccattgaaatgccctttccatttccatcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattatt 15513628  T
Q  101 gttcttcttcctttgagaattactcatttccttaatttaatgtgatttaactcatgttcggcannnnnnnnnnnacaataagttaattcatgctagcact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||           | ||||||||||||||||||||||||    
T  15513627 gttcttcttcctttgagaattactcatttccttaatttaatgtgatttaactcacgttcggcatttttttttttataataagttaattcatgctagcact 15513528  T
Q  201 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513527 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 15513433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 15514319 - 15514277
Alignment:
Q  32 catcaacctaggttgtgatacaaacataatagtagacccttac 74  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  15514319 catcaacctaggttgcgatacaaacataatagtagacccttac 15514277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 12767337 - 12767422
Alignment:
Q  197 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 282  Q
    ||||| ||||||||||| |   |||| |||||||||||||  | |||||||||||||  | ||||||||| ||| |||||||||||    
T  12767337 cacttctaagatcggttgatccgacttaaaaagtgattgaaacgatcttaaaagtgttagcgtgagttaactcaagttgaaaaatg 12767422  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 9962954 - 9963024
Alignment:
Q  225 aaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    |||||||||||| |||||||||||||||||  |||||||||| | ||| ||||||||| ||||||| ||||    
T  9962954 aaaagtgattgaatcaatcttaaaagtgtcattgtgagttaacttacgctgaaaaatgccgaacgtaagtt 9963024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 295
Target Start/End: Original strand, 18398599 - 18398670
Alignment:
Q  224 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    ||||||||| |||  | |||||||||||||| |||| |||||| |||||||||||||| |||| ||||||||    
T  18398599 aaaaagtgaatgaaccgatcttaaaagtgtcagtgtaagttaactcacgttgaaaaatatcgagcgtgagtt 18398670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 295
Target Start/End: Original strand, 31536419 - 31536513
Alignment:
Q  201 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    ||||||||| ||||||  |||| ||||| | |||||  | ||||||||| | || ||||||||||| || |||| |||||||| |||||||||||    
T  31536419 tttaagatcagttaaaccgacttaaaaaattattgaaccgatcttaaaaatatcagtgtgagttaactctcgttaaaaaatgttgaacgtgagtt 31536513  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 36289674 - 36289589
Alignment:
Q  197 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 282  Q
    ||||||||||||   ||||| ||||| ||||||||||| | || ||||||||||||||  |||||  ||| ||||| |||||||||    
T  36289674 cacttttaagattcattaaactgacttaaaaagtgattaaatcgatcttaaaagtgtcaatgtgaactaactcacgctgaaaaatg 36289589  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 295
Target Start/End: Complemental strand, 12670841 - 12670743
Alignment:
Q  197 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    ||||||||||||||||| |   | || ||||| |||||||  | |||||||||||||| | ||||||||| |||||||| ||||||||||| |||||||    
T  12670841 cacttttaagatcggttgagtcggcttaaaaattgattgaaccgatcttaaaagtgtcagcgtgagttaagtcacgttgcaaaatgtcgaatgtgagtt 12670743  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 10633448 - 10633364
Alignment:
Q  198 acttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 282  Q
    |||||||||||||||| ||  |||| ||||| ||||||| |||||| | ||||  ||  |||||||||| |||||||||||||||    
T  10633448 acttttaagatcggttgaaacgacttaaaaattgattgaatcaatcctcaaaggatcactgtgagttaactcacgttgaaaaatg 10633364  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 30481776 - 30481661
Alignment:
Q  180 aagttaattcatgctagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaa 279  Q
    ||||||||| |  |||| ||||||||||| |||| || || || ||||| | |||||    |||||||||||| | ||||||||||| ||||| | ||||    
T  30481776 aagttaatttacactagaacttttaagataggttgaattggcttaaaaaattattgaactgatcttaaaagtgccagtgtgagttaactcacgctaaaaa 30481677  T
Q  280 atgtcgaacgtgagtt 295  Q
    ||||||||| ||||||    
T  30481676 atgtcgaacatgagtt 30481661  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 34557347 - 34557292
Alignment:
Q  241 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagttt 296  Q
    ||||||||||||  |||||||||||| ||||| ||||||||||||| || ||||||    
T  34557347 atcttaaaagtgctggtgtgagttaactcacgctgaaaaatgtcgagcgagagttt 34557292  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 33710607 - 33710553
Alignment:
Q  241 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    |||||||||||||| | || |||||| ||||| ||||||||||||||||| ||||    
T  33710607 atcttaaaagtgtcagcgtaagttaactcacgctgaaaaatgtcgaacgtaagtt 33710553  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 4422823 - 4422892
Alignment:
Q  197 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaa 266  Q
    ||||||||||||||||| |   |||| |||||||||||||| | |||| ||||||| ||| |||||||||    
T  4422823 cacttttaagatcggttgattcgacttaaaaagtgattgagccgatctaaaaagtgacggcgtgagttaa 4422892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 21488921 - 21488865
Alignment:
Q  197 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgt 253  Q
    ||||||||||||||||| || ||||| ||||| |||||||  | |||||||||||||    
T  21488921 cacttttaagatcggttgaactgacttaaaaaatgattgaaccgatcttaaaagtgt 21488865  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 9030636 - 9030583
Alignment:
Q  224 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaa 277  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||||| ||||    
T  9030636 aaaaagtgattgaatcgatcttaaaagtgtcggtgtgagttaactcacgctgaa 9030583  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 37616321 - 37616265
Alignment:
Q  239 caatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    |||||||||||||||| | |||||||||  |||| ||||||||||||||||||||||    
T  37616321 caatcttaaaagtgtcagcgtgagttaacccacgctgaaaaatgtcgaacgtgagtt 37616265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 8238828 - 8238727
Alignment:
Q  194 tagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgag 293  Q
    |||||||||||||||||||| |   ||||||||||||||||||    |||| ||||||||| | ||||||||| |  || |||||||| |||| ||||||    
T  8238828 tagcacttttaagatcggttgatccgactaaaaaagtgattgaactgatctaaaaagtgtcagcgtgagttaactaccgctgaaaaatatcgagcgtgag 8238729  T
Q  294 tt 295  Q
    ||    
T  8238728 tt 8238727  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 10340283 - 10340324
Alignment:
Q  241 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 282  Q
    |||||||||||||| | ||||||||| |||||||||||||||    
T  10340283 atcttaaaagtgtcagcgtgagttaactcacgttgaaaaatg 10340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 10340267 - 10340211
Alignment:
Q  224 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaa 280  Q
    ||||| ||||||| || |||| ||||||||| ||||||||||| ||||| |||||||    
T  10340267 aaaaaatgattgaatcgatctaaaaagtgtcagtgtgagttaactcacgctgaaaaa 10340211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 36203407 - 36203435
Alignment:
Q  226 aaagtgattgagtcaatcttaaaagtgtc 254  Q
    |||||||||||||||||||||||||||||    
T  36203407 aaagtgattgagtcaatcttaaaagtgtc 36203435  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 11329560 - 11329505
Alignment:
Q  199 cttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtc 254  Q
    ||||||||||||||||||  |||| |||||||||| || |||||||||||||||||    
T  11329560 cttttaagatcggttaaaccgacttaaaaagtgatcgaatcaatcttaaaagtgtc 11329505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 25690807 - 25690712
Alignment:
Q  181 agttaattcatgctagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttga 276  Q
    ||||||||||||||  ||||||||||||||||| ||  | || |||||||||||||  | |||| ||||||||| | ||||||||| ||| |||||    
T  25690807 agttaattcatgctgacacttttaagatcggttgaaccggcttaaaaagtgattgaaccgatctaaaaagtgtcagcgtgagttaactcatgttga 25690712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 295
Target Start/End: Original strand, 16780773 - 16780871
Alignment:
Q  197 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    ||||||||||||||||| ||  |||| |||||||||||||  | |||||||||||| | | || |||||| ||| | ||||||||||||| | ||||||    
T  16780773 cacttttaagatcggttgaatcgacttaaaaagtgattgaaccgatcttaaaagtgcccgcgtaagttaactcatgctgaaaaatgtcgagcatgagtt 16780871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 41195739 - 41195668
Alignment:
Q  224 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    ||||||||||||| |||| |||||||||||| | ||||||||| | ||| | ||||||| ||| ||||||||    
T  41195739 aaaaagtgattgaatcaaccttaaaagtgtcagcgtgagttaactaacgctaaaaaatgccgagcgtgagtt 41195668  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 30357895 - 30357963
Alignment:
Q  224 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtga 292  Q
    ||||||||| ||| ||||||| |||||||||||||||| |||  |  || ||||||||| |||||||||    
T  30357895 aaaaagtgagtgaatcaatctaaaaagtgtcggtgtgaattagctaccgatgaaaaatgccgaacgtga 30357963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 40423307 - 40423422
Alignment:
Q  180 aagttaattcatgctagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaa 279  Q
    ||||||| |||||||  ||||||||||||  ||| ||  |||| |||||||||||||  | ||||||||| |||| | ||||||||||||||| | ||||    
T  40423307 aagttaactcatgctgacacttttaagatttgttgaaccgacttaaaaagtgattgaaccgatcttaaaattgtcagcgtgagttaattcacgcttaaaa 40423406  T
Q  280 atgtcgaacgtgagtt 295  Q
    |||  || ||||||||    
T  40423407 atgctgagcgtgagtt 40423422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 43115622 - 43115575
Alignment:
Q  241 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaac 288  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  43115622 atcttaaaagtgtcagtgtgagttaactcacgctgaaaaatgtcgaac 43115575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 53449103 - 53449054
Alignment:
Q  246 aaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    ||||||||||| ||||||||| |||| ||||||||||||||| |||||||    
T  53449103 aaaagtgtcggcgtgagttaactcacattgaaaaatgtcgaatgtgagtt 53449054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 25844267 - 25844325
Alignment:
Q  196 gcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtc 254  Q
    |||||||||||||||||| ||  | || |||||| |||||| |||||||||||||||||    
T  25844267 gcacttttaagatcggttgaaccggcttaaaaagcgattgaatcaatcttaaaagtgtc 25844325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 40421951 - 40421999
Alignment:
Q  224 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacg 272  Q
    |||||||||||||   ||||||||||||||| ||||||||||| |||||    
T  40421951 aaaaagtgattgaactaatcttaaaagtgtcagtgtgagttaactcacg 40421999  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 39126966 - 39127019
Alignment:
Q  242 tcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    ||||||||||||| | ||||||||| ||||| ||||||||||||| ||||||||    
T  39126966 tcttaaaagtgtcagcgtgagttaactcacgctgaaaaatgtcgagcgtgagtt 39127019  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 25485009 - 25485063
Alignment:
Q  241 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    |||||||||||| | | ||||||||| ||||| || |||||||||||||||||||    
T  25485009 atcttaaaagtggcagcgtgagttaactcacgctggaaaatgtcgaacgtgagtt 25485063  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 34062700 - 34062624
Alignment:
Q  219 gactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    |||| |||||||||||||  | || ||||||||||| | ||||||| | ||||| |||||||||| || ||||||||    
T  34062700 gacttaaaaagtgattgaaccgattttaaaagtgtcagcgtgagttcactcacgctgaaaaatgttgagcgtgagtt 34062624  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 31419 - 31363
Alignment:
Q  239 caatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    ||||||||||| |||  ||||||||||| ||||| ||||||||| ||||||||||||    
T  31419 caatcttaaaaatgtatgtgtgagttaactcacgctgaaaaatgccgaacgtgagtt 31363  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 33617713 - 33617767
Alignment:
Q  241 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 295  Q
    ||||||||||| ||| | | ||||||||||||||||||||||||||  |||||||    
T  33617713 atcttaaaagtatcgctatcagttaattcacgttgaaaaatgtcgagtgtgagtt 33617767  T

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