View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_166 (Length: 295)
Name: NF6864A_low_166
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_166 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 53513541 - 53513817
Alignment:
| Q |
6 |
acattcaacattaagaaaatatatatttggatccaactgattaatcaattgattgtttttaatagagcatatatgcatattttagggttgaaccatttac |
105 |
Q |
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| T |
53513541 |
acattcaacattaagaaaatatatatttggatccaactgattaatctattgattgtttttaatagagtatatatgcatattttagggttgaaccatttac |
53513640 |
T |
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| Q |
106 |
agtttttaatagtttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcact |
205 |
Q |
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| T |
53513641 |
agtttttaataatttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcact |
53513740 |
T |
|
| Q |
206 |
gatagaccatctccagaacatttggatacagaagtaaagttgggcttagcatcaggaaatacagtctcaccaccttc |
282 |
Q |
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| T |
53513741 |
gatagaccatctccagaacatttggatacagaagtaaagttgggctgagcatcaggaaatacagtctcaccaccttc |
53513817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 28 - 282
Target Start/End: Original strand, 53509954 - 53510208
Alignment:
| Q |
28 |
atatttggatccaactgattaatcaattgattgtttttaatagagcatatatgcatattttagggttgaaccatttacagtttttaatagtttctaaccg |
127 |
Q |
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| T |
53509954 |
atatttagatccaactcattaatctatagattgtgtttaatagagaatgtatacatattttacagttgaacgagttgcggtttttaatagattctaaccg |
53510053 |
T |
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| Q |
128 |
tgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcactgatagaccatctccagaacatt |
227 |
Q |
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| T |
53510054 |
tgtaaactagaagtatcaagtgtgccatctggcttcatgctccgaaacagcagagcatcacccatttttggtttcactgatagacccttttcaggatatt |
53510153 |
T |
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| Q |
228 |
tggatacagaagtaaagttgggcttagcatcaggaaatacagtctcaccaccttc |
282 |
Q |
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| T |
53510154 |
tggatacagaatttatgttaggcttagcattaggaaatacagtctcaccaccttc |
53510208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 116 - 282
Target Start/End: Original strand, 53523948 - 53524117
Alignment:
| Q |
116 |
agtttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcactgatagaccat |
215 |
Q |
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| T |
53523948 |
agtttctaaccatgtaagctagctgtatctagtgagccatctggcttaacgctccaaaacagcagagcatcgcccattttcggtttcactactaaaccct |
53524047 |
T |
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| Q |
216 |
ctccag---aacatttggatacagaagtaaagttgggcttagcatcaggaaatacagtctcaccaccttc |
282 |
Q |
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| T |
53524048 |
ttccaggatgatatttggatacagaattaaagttgggcttagcattaggaaatacagtctcaccaccttc |
53524117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 53547540 - 53547659
Alignment:
| Q |
94 |
tgaaccatttacagtttttaatagtttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatt |
193 |
Q |
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| T |
53547540 |
tgaaccagttaaagtatttaatagtccctaaccgtgtaaactggatgcatctagtgtggcatctggcctcatgctccaaaacagcagagcatcacccatt |
53547639 |
T |
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| Q |
194 |
tttggtttcactgatagacc |
213 |
Q |
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| T |
53547640 |
tttggtttcagtgatagacc |
53547659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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