View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_low_179 (Length: 288)
Name: NF6864A_low_179
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_179 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 127 - 282
Target Start/End: Original strand, 4877259 - 4877429
Alignment:
| Q |
127 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt---------------ttaatgtagtagttgaagttacctctgcagaagtat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4877259 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat |
4877358 |
T |
|
| Q |
212 |
ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4877359 |
ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
4877429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 127 - 282
Target Start/End: Original strand, 4872957 - 4873129
Alignment:
| Q |
127 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt-----------------ttaatgtagtagttgaagttacctctgcagaagt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4872957 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttattttttcttttattttaatgtagtagttgaagttacctctgcagaagt |
4873056 |
T |
|
| Q |
210 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873057 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
4873129 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 172 - 282
Target Start/End: Original strand, 30189939 - 30190049
Alignment:
| Q |
172 |
tattttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactac |
271 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30189939 |
tattttaatgtagtagttgaagttacctctgcaaaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactac |
30190038 |
T |
|
| Q |
272 |
tatgctgtcct |
282 |
Q |
| |
|
||||||||||| |
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|
| T |
30190039 |
tatgctgtcct |
30190049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 30189876 - 30189928
Alignment:
| Q |
127 |
tgttgagacattgagatttcagatgtacacaatagta-ttttgtgatatttta |
178 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
30189876 |
tgttgagacattgagctttcagatgtacacaatagtatttttgtgatatttta |
30189928 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 127 - 282
Target Start/End: Original strand, 3058315 - 3058487
Alignment:
| Q |
127 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt-----------------ttaatgtagtagttgaagttacctctgcagaagt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3058315 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt |
3058414 |
T |
|
| Q |
210 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3058415 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
3058487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 127 - 282
Target Start/End: Original strand, 3062616 - 3062788
Alignment:
| Q |
127 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt-----------------ttaatgtagtagttgaagttacctctgcagaagt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
3062616 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt |
3062715 |
T |
|
| Q |
210 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3062716 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
3062788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 127 - 280
Target Start/End: Complemental strand, 26083081 - 26082911
Alignment:
| Q |
127 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagttacctctgcagaagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26083081 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt |
26082982 |
T |
|
| Q |
210 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtc |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26082981 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtc |
26082911 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 26065216 - 26065168
Alignment:
| Q |
130 |
tgagacattgagatttcagatgtacacaatagtattttgtgatatttta |
178 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
26065216 |
tgagacattgagatttcagattaatacaatagtattttgtgatatttta |
26065168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 127 - 282
Target Start/End: Complemental strand, 6668144 - 6667972
Alignment:
| Q |
127 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagttacctctgcagaagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6668144 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttattttttcttttattttaatgtagtagttgaagttacctctgcagaagt |
6668045 |
T |
|
| Q |
210 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6668044 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
6667972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 127 - 282
Target Start/End: Complemental strand, 17439584 - 17439412
Alignment:
| Q |
127 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagttacctctgcagaagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17439584 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt |
17439485 |
T |
|
| Q |
210 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17439484 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
17439412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 127 - 282
Target Start/End: Complemental strand, 17443886 - 17443714
Alignment:
| Q |
127 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagttacctctgcagaagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
17443886 |
tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt |
17443787 |
T |
|
| Q |
210 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17443786 |
atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct |
17443714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 28010363 - 28010300
Alignment:
| Q |
174 |
ttttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgttt |
237 |
Q |
| |
|
||||||| |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
28010363 |
ttttaatatagttgttgaagttacctctgcataagtatggtgacccatacttgttgaagtgttt |
28010300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 28013789 - 28013761
Alignment:
| Q |
127 |
tgttgagacattgagatttcagatgtaca |
155 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28013789 |
tgttgagacattgagatttcagatgtaca |
28013761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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