View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_180 (Length: 287)
Name: NF6864A_low_180
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_180 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 39919750 - 39920023
Alignment:
| Q |
1 |
aatctcgctaaactgaataataataatcgatggattttgagggttaggttctaccttcggaaaactcctcaagttggccacattaagtgtctgtttggtt |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39919750 |
aatctcgctaaacttaataataataatcgatggattttgag--ttaggttctaccttcggaaaactcctcaagttggccacattaagtgtctgtttggtt |
39919847 |
T |
|
| Q |
101 |
agtggtgggaaggagttaatgcatgtctggagtgaagcaaattctctgcttcttgtttcatgaccaaaaagtgcattgcgacgcgannnnnnnagttgcc |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
39919848 |
agtggtgggaaggagttaacgcatgtctggagtgaagcaaattctctgcttcttgttccatgaccaaaaagtgcattgcgacgcgatttttttagttgcc |
39919947 |
T |
|
| Q |
201 |
gcagatttgaaacttcacaccacacactaagcccatgccaaatctcacaaaactctgtataaacctccgcattcat |
276 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39919948 |
gcggatttgaaacttcacaccacacactaagcccatgccaaatctcacaaaactctgtataaacctccgcattcat |
39920023 |
T |
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