View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_184 (Length: 285)

Name: NF6864A_low_184
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_184
NF6864A_low_184
[»] chr3 (8 HSPs)
chr3 (19-278)||(26444947-26445206)
chr3 (101-275)||(2353204-2353378)
chr3 (138-273)||(19930008-19930142)
chr3 (162-275)||(9372208-9372321)
chr3 (138-247)||(42253534-42253643)
chr3 (159-267)||(42256809-42256921)
chr3 (161-214)||(19935230-19935283)
chr3 (188-275)||(14658137-14658224)
[»] chr1 (8 HSPs)
chr1 (19-266)||(21501103-21501350)
chr1 (19-155)||(8040728-8040863)
chr1 (162-275)||(43254123-43254236)
chr1 (159-259)||(49387599-49387699)
chr1 (136-271)||(9111511-9111646)
chr1 (175-272)||(38825486-38825584)
chr1 (137-263)||(24981133-24981259)
chr1 (162-269)||(38828683-38828791)
[»] chr2 (7 HSPs)
chr2 (19-205)||(66024-66210)
chr2 (19-259)||(27082942-27083183)
chr2 (159-225)||(10941419-10941484)
chr2 (159-225)||(10947288-10947353)
chr2 (159-214)||(10938058-10938112)
chr2 (168-275)||(18739113-18739221)
chr2 (232-275)||(27107311-27107354)
[»] chr7 (7 HSPs)
chr7 (151-275)||(15569574-15569698)
chr7 (159-275)||(13815746-13815862)
chr7 (138-275)||(2609574-2609711)
chr7 (162-275)||(32352425-32352538)
chr7 (163-263)||(31206623-31206723)
chr7 (137-238)||(22301122-22301224)
chr7 (168-263)||(39426453-39426548)
[»] chr6 (7 HSPs)
chr6 (159-275)||(2936141-2936257)
chr6 (159-250)||(24044926-24045017)
chr6 (183-275)||(3835677-3835769)
chr6 (188-275)||(14579627-14579714)
chr6 (159-253)||(24041623-24041717)
chr6 (152-214)||(19973737-19973799)
chr6 (168-275)||(19697847-19697955)
[»] chr4 (9 HSPs)
chr4 (163-275)||(31767445-31767557)
chr4 (138-275)||(13250497-13250635)
chr4 (162-275)||(43287856-43287970)
chr4 (136-273)||(895453-895590)
chr4 (138-267)||(4747204-4747332)
chr4 (159-225)||(13010526-13010593)
chr4 (162-275)||(43472112-43472224)
chr4 (168-263)||(6667721-6667816)
chr4 (163-263)||(44643473-44643572)
[»] scaffold0028 (2 HSPs)
scaffold0028 (136-275)||(110129-110268)
scaffold0028 (163-275)||(127708-127820)
[»] chr5 (5 HSPs)
chr5 (168-273)||(13291963-13292068)
chr5 (132-262)||(39292120-39292250)
chr5 (181-261)||(26703032-26703113)
chr5 (181-261)||(26972765-26972846)
chr5 (101-263)||(18594835-18594995)
[»] scaffold0076 (1 HSPs)
scaffold0076 (132-275)||(6726-6869)
[»] chr8 (3 HSPs)
chr8 (94-217)||(41739805-41739934)
chr8 (159-214)||(33940435-33940490)
chr8 (168-263)||(1788901-1788996)
[»] scaffold0216 (1 HSPs)
scaffold0216 (232-275)||(12121-12164)
[»] scaffold0293 (1 HSPs)
scaffold0293 (191-263)||(4950-5022)
[»] scaffold0933 (2 HSPs)
scaffold0933 (164-214)||(813-863)
scaffold0933 (232-268)||(1111-1147)
[»] scaffold0002 (1 HSPs)
scaffold0002 (192-275)||(448729-448809)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 26444947 - 26445206
Alignment:
Q  19 acatcaattgaatataagcaaaagagaaggatcgataaatttatttgtccttaataattttagatagctagagtactgacataactctatcaatatcatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  26444947 acatcaattgaatataagcaaaagagaaggatcgataaatttatctgtccttactaattttagatagctagagtactgacataactctatcaatatcctt 26445046  T
Q  119 caccaacaactcatatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgt 218  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26445047 caccaacaactcatatgtaacctgcaaaataataaacggatatataacatgaggcatgacaaagtcactgtccttaaggatttatccgcctcataatcgt 26445146  T
Q  219 atatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtgacataa 278  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  26445147 atatcctgtcaagatacaacatgttcttccctgatatgaatcatatcagaggcgacataa 26445206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 101 - 275
Target Start/End: Complemental strand, 2353378 - 2353204
Alignment:
Q  101 aactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatt 200  Q
    ||||||||||| ||  | |||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||  ||||||  |||||||||||||    
T  2353378 aactctatcaacattctccaccaacaactcatatgtaacctgcaaaataataaaccgttatataacctgaggcatgatgaagtcattgtccttaaggatt 2353279  T
Q  201 tatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtgaca 275  Q
    ||||||||||||||  |  ||||||  ||  |||||||| ||||||| |||||||||||||||| ||||||||||    
T  2353278 tatccgcctcataagtgcttatcctcccaggatacaacaggttcttctctgatatgaatcatataagaggtgaca 2353204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 273
Target Start/End: Original strand, 19930008 - 19930142
Alignment:
Q  138 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaa 237  Q
    |||||||||||| |||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||  | | ||||||    
T  19930008 acctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcaccgtccttaaggatttatccgcctcataagcgcatatcct-cccagatacaa 19930106  T
Q  238 catgttcttccctgatatgaatcatatcagaggtga 273  Q
    ||||||||||||||| |||||||| |||||||||||    
T  19930107 catgttcttccctgagatgaatcacatcagaggtga 19930142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 9372208 - 9372321
Alignment:
Q  162 ataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 261  Q
    ||||| ||||||||||| ||||||| |||||||||||||||| |||||||||| || ||||| |  ||  |||||||| |||| ||||||||||||||||    
T  9372208 ataacctgaggcatgacgaagtcactgtccttaaggatttattcgcctcataagcgcatatcgtcccaggatacaacaggttcatccctgatatgaatca 9372307  T
Q  262 tatcagaggtgaca 275  Q
    ||| ||||||||||    
T  9372308 tatgagaggtgaca 9372321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 42253534 - 42253643
Alignment:
Q  138 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaa 237  Q
    |||||||||||| |||||   ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| || |||||||   |  ||||||    
T  42253534 acctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcactgtccttaaggatttacccgcctcataagcgcatatcctccaaggatacaa 42253633  T
Q  238 catgttcttc 247  Q
    ||||||||||    
T  42253634 catgttcttc 42253643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 42256809 - 42256921
Alignment:
Q  159 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcg----tatatcctggcaaaatacaacatgttcttccctgata 254  Q
    ||||||||||||||| ||||||| |||| ||| |||||||||||||| | |||||| ||    ||||| ||  ||  ||||||||| |||||||||||||    
T  42256809 tatataacatgaggcgtgacaaaatcactgtctttaaggatttatcctcttcataagcgcatatatatactcccaggatacaacatattcttccctgata 42256908  T
Q  255 tgaatcatatcag 267  Q
    ||||||| |||||    
T  42256909 tgaatcacatcag 42256921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 19935230 - 19935283
Alignment:
Q  161 tataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 214  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||| ||||||||    
T  19935230 tataatatgaggcgtgacaaagtcactgtccttaaggatttatcctcctcataa 19935283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 14658224 - 14658137
Alignment:
Q  188 gtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtgaca 275  Q
    ||||||||||||||||| || |||||| || |||||||  ||  ||||||||  |||||| || | ||||||||| ||||||||||||    
T  14658224 gtccttaaggatttatctgcatcataagcgcatatccttccaggatacaacaaattcttctctaacatgaatcatgtcagaggtgaca 14658137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 21501103 - 21501350
Alignment:
Q  19 acatcaattgaatataagcaaaagagaaggatcgataaatttatttgtccttaataattttagatagctagagtactgacataactctatcaatatcatt 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| || ||    
T  21501103 acatcaattgaatataagcaaaagagaaggatcgataaacttatatgttcttaataattttagatagctagagtactgacataactctgtcaatgtcctt 21501202  T
Q  119 caccaacaactcatatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgt 218  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||| ||||||| |||||||||| |  || ||||||||||||||| |||||||  ||    
T  21501203 caccaacaactcatatgtaacctgcaaaataataaatagttatataatatgaggcgtgacaaagtcgctatctttaaggatttatccgtctcataagtgt 21501302  T
Q  219 atatcctggcaaaatacaacatgttcttccctgatatgaatcatatca 266  Q
    |||||||   |  |||||||||||||||| || |||| ||||||||||    
T  21501303 atatcctcctaggatacaacatgttcttctctaatataaatcatatca 21501350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 8040863 - 8040728
Alignment:
Q  19 acatcaattgaatataagcaaaagagaaggatcgataaatttatttgtccttaataattttagatagctagagtactgacataactctatcaatatcatt 118  Q
    |||||||||||||||||  |||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||    
T  8040863 acatcaattgaatataaataaaagagaaggatcgataaacttatatgtccttaataattttatatagctagagtactgacataactctgtcaatatc-tt 8040765  T
Q  119 caccaacaactcatatgtaacctgcaaaataataaac 155  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  8040764 caccaacaacttatatgtaacttgcaaaataataaac 8040728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 43254236 - 43254123
Alignment:
Q  162 ataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 261  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||||||||| || |||||||  ||  ||||||||||||||||||  ||||||||||    
T  43254236 ataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcctcccaggatacaacatgttcttcccatatatgaatca 43254137  T
Q  262 tatcagaggtgaca 275  Q
    ||||||||||||||    
T  43254136 tatcagaggtgaca 43254123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 49387599 - 49387699
Alignment:
Q  159 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaa 258  Q
    ||||||||||||||| |||||||||||| | |||||||||||||| ||||| |||| || |||||||  ||  |||||||||||||||||||||| ||||    
T  49387599 tatataacatgaggcgtgacaaagtcactggccttaaggatttattcgccttataagcgcatatcctcccaggatacaacatgttcttccctgatgtgaa 49387698  T
Q  259 t 259  Q
    |    
T  49387699 t 49387699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 271
Target Start/End: Original strand, 9111511 - 9111646
Alignment:
Q  136 taacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaagga-tttatccgcctcataatcgtatatcctggcaaaata 234  Q
    |||||||||||||| |||||   |||||||  |||||| ||||| |||||| |||||| |||| |||||||||||||||| || ||||| |  ||  |||    
T  9111511 taacctgcaaaatagtaaactgttatataatctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcttcccaggata 9111610  T
Q  235 caacatgttcttccctgatatgaatcatatcagaggt 271  Q
    ||||| ||||||| ||||||| |||||||||||||||    
T  9111611 caaca-gttcttcactgatataaatcatatcagaggt 9111646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 38825486 - 38825584
Alignment:
Q  175 tgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtg 272  Q
    |||| ||||||| |||||||||||||| |||| |||||||| || |||||||  ||  |||||||| ||||||| ||| |||||||||||||| |||||    
T  38825486 tgacgaagtcactgtccttaaggattttatcctcctcataaacgcatatcctcccaggatacaacaagttcttctctgctatgaatcatatcaaaggtg 38825584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 24981133 - 24981259
Alignment:
Q  137 aacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaagga-tttatccgcctcataatcgtatatcctggcaaaatac 235  Q
    ||||||||||| || | || | ||| |||| |||||| ||||| ||||| ||||||| |||| |||||||||||||||| |  |||||||  ||  ||||    
T  24981133 aacctgcaaaacaaaatactattatgtaacctgaggcgtgacatagtcagcgtccttgaggattttatccgcctcataagcacatatcctcccaggatac 24981232  T
Q  236 aacatgttcttccctgatatgaatcata 263  Q
    |||| ||||||||| | |||||||||||    
T  24981233 aaca-gttcttccccgttatgaatcata 24981259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 269
Target Start/End: Original strand, 38828683 - 38828791
Alignment:
Q  162 ataacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatc 260  Q
    ||||| |||||| |||| |||||||  ||||||||||||| |||||||| |||| |  ||||| |  ||  ||| |||| ||||||||||  ||||||||    
T  38828683 ataacttgaggcgtgacgaagtcactatccttaaggattttatccgccttataagctcatatcttcccaggataaaacaagttcttccctactatgaatc 38828782  T
Q  261 atatcagag 269  Q
    |||||||||    
T  38828783 atatcagag 38828791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 66024 - 66210
Alignment:
Q  19 acatcaattgaatataagcaaaagagaaggatcgataaatttatttgtccttaataattttagatagctagagtactgacataactctatcaatatcatt 118  Q
    |||||||||||||||||||||||||||||||| | || | |||| | ||||||||| |||||||||||||| || || |||||||||| |||||||| ||    
T  66024 acatcaattgaatataagcaaaagagaaggatggttacacttatgtatccttaatatttttagatagctagggtgctaacataactctgtcaatatcttt 66123  T
Q  119 caccaacaactcatatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatcc 205  Q
    ||||||||||||||||||||| |  ||||||||||| |  | ||||||||||||| ||| ||||||||  |  ||||||||||||||    
T  66124 caccaacaactcatatgtaacttataaaataataaatagttgtataacatgaggcgtgataaagtcactatatttaaggatttatcc 66210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 27082942 - 27083183
Alignment:
Q  19 acatcaattgaatataagcaaaagagaaggatcgataaatttatttgtccttaataattttagatagctagagt-actgacataactctatcaatatcat 117  Q
    ||||||||| |||||||||||||||||  |||| ||||| |||| ||||| || || ||||  ||| | ||  | | |||||| |||||||||||||| |    
T  27082942 acatcaattaaatataagcaaaagagatagatcaataaacttatctgtccctagtatttttgtataaccaggttcaatgacatgactctatcaatatcct 27083041  T
Q  118 tcaccaacaactcatatgtaacctgcaaaa-taataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatc 216  Q
    |||||||||||||| ||||||||| ||||| ||||||||   ||||||| |||||||||||||||||| | ||||| |||||||||||||||||| || |    
T  27083042 tcaccaacaactca-atgtaacctacaaaaataataaactgttatataagatgaggcatgacaaagtcgctgtcctgaaggatttatccgcctcacaagc 27083140  T
Q  217 gtatatcctggcaaaatacaacatgttcttccctgatatgaat 259  Q
    | |||||||  ||  |||||||| |||||||||| ||||||||    
T  27083141 gcatatcctcccaggatacaacaggttcttccctaatatgaat 27083183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 10941419 - 10941484
Alignment:
Q  159 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcct 225  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||| |||||||||| || |||||||    
T  10941419 tatataacatgaggcgtgacaa-gtcactgtccttaaggatttattcgcctcataagcgcatatcct 10941484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 10947288 - 10947353
Alignment:
Q  159 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcct 225  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||| |||||||||| || |||||||    
T  10947288 tatataacatgaggcgtgacaa-gtcactgtccttaaggatttattcgcctcataagcgcatatcct 10947353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 10938058 - 10938112
Alignment:
Q  159 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 214  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||    
T  10938058 tatataacatgaggcgtgacaa-gtcactgtccttaaggatttattcgcctcataa 10938112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 275
Target Start/End: Original strand, 18739113 - 18739221
Alignment:
Q  168 tgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcat-atc 265  Q
    |||||| ||||| |||||| |||||| ||||||| ||||||||||||| || |||||||  || ||||||||  ||||||||| | |||||||||| |||    
T  18739113 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccacaatacaac-ggttcttccccgttatgaatcataatc 18739211  T
Q  266 agaggtgaca 275  Q
     |||||||||    
T  18739212 ggaggtgaca 18739221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 27107354 - 27107311
Alignment:
Q  232 atacaacatgttcttccctgatatgaatcatatcagaggtgaca 275  Q
    |||||||||||||||||||||| | ||||| |||||||||||||    
T  27107354 atacaacatgttcttccctgatgtaaatcacatcagaggtgaca 27107311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 151 - 275
Target Start/End: Complemental strand, 15569698 - 15569574
Alignment:
Q  151 taaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccct 250  Q
    |||||| ||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||||| |  |||||||  ||  |||||||| ||||||| ||    
T  15569698 taaacatatatataacctgaggcgtgacaaagtcactgtccttagggatttatccgcctcataagcacatatcctcccaggatacaacaggttcttctct 15569599  T
Q  251 gatatgaatcatatcagaggtgaca 275  Q
    |||||||||||||||||||||||||    
T  15569598 gatatgaatcatatcagaggtgaca 15569574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 13815862 - 13815746
Alignment:
Q  159 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaa 258  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| || ||||| |  ||  ||||||||||||||||||| || ||||    
T  13815862 tatataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcttcccaggatacaacatgttcttccctaatgtgaa 13815763  T
Q  259 tcatatcagaggtgaca 275  Q
    ||| |||||||||||||    
T  13815762 tcacatcagaggtgaca 13815746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 275
Target Start/End: Original strand, 2609574 - 2609711
Alignment:
Q  138 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaa 237  Q
    |||||||||||| ||| |   |||||||| |||||| |||| |||||||  |||||||| ||||||| | ||||||| || ||||||| |||  ||||||    
T  2609574 acctgcaaaatagtaagcctttatataacctgaggcgtgacgaagtcactatccttaagtatttatctgtctcataagcgcatatcctcgcaggatacaa 2609673  T
Q  238 catgttcttccctgatatgaatcatatcagaggtgaca 275  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  2609674 catgttcttctctgatatgaatcatatcagatgtgaca 2609711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 32352425 - 32352538
Alignment:
Q  162 ataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 261  Q
    |||||| ||||| |||||||||||| |||||||||||||||| |||||||||| || |||||||  ||  | ||||||| |||||| | |||||||||||    
T  32352425 ataacacgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcctcccaggacacaacatattcttctcagatatgaatca 32352524  T
Q  262 tatcagaggtgaca 275  Q
     |||||||||||||    
T  32352525 catcagaggtgaca 32352538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 263
Target Start/End: Original strand, 31206623 - 31206723
Alignment:
Q  163 taacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 261  Q
    |||| |||||| ||||| |||||| ||| || ||||||| |||| |||||||| || |||||||||||  |||||||| ||||||||| | |||||||||    
T  31206623 taacctgaggcgtgacatagtcactgtctttgaggattttatccacctcataagcgcatatcctggcaggatacaaca-gttcttccccgttatgaatca 31206721  T
Q  262 ta 263  Q
    ||    
T  31206722 ta 31206723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 22301122 - 22301224
Alignment:
Q  137 aacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaagga-tttatccgcctcataatcgtatatcctggcaaaatac 235  Q
    ||||||||||| || | || | ||| |||| |||||| ||||| |||||| |||||| |||| |||||||||||||||| || |||||||  ||| ||||    
T  22301122 aacctgcaaaacaaaatactattatgtaacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaagatac 22301221  T
Q  236 aac 238  Q
    |||    
T  22301222 aac 22301224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 39426453 - 39426548
Alignment:
Q  168 tgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcata 263  Q
    |||||| ||| | |||||| |||||| ||||||| ||||| ||||||| || |||||||  ||| ||| |||| ||||||||||| |||||||||||    
T  39426453 tgaggcgtgatatagtcactgtccttgaggattttatccgtctcataagcgaatatcctcccaagataaaaca-gttcttccctgttatgaatcata 39426548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 2936141 - 2936257
Alignment:
Q  159 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaa 258  Q
    ||||||||||||||  |||| ||||||| ||||||||||||||||||||||||||| || ||||| |  ||| |||| ||||||||||| ||||||| ||    
T  2936141 tatataacatgaggtgtgacgaagtcactgtccttaaggatttatccgcctcataagcgcatatcttttcaagataccacatgttcttctctgatataaa 2936240  T
Q  259 tcatatcagaggtgaca 275  Q
    ||| |||||||||||||    
T  2936241 tcacatcagaggtgaca 2936257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 24044926 - 24045017
Alignment:
Q  159 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccct 250  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| || |||||||  ||  |||||||||||||||||||    
T  24044926 tatataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataagcgcatatcctcccaggatacaacatgttcttccct 24045017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 3835677 - 3835769
Alignment:
Q  183 tcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtgaca 275  Q
    ||||||||||||||||||||| | |||||||| || |||||||  ||  ||||||||  |||||| ||||||| |||||||||||||||||||    
T  3835677 tcaccgtccttaaggatttattcacctcataagcgcatatcctctcaggatacaacaaattcttctctgatataaatcatatcagaggtgaca 3835769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 14579714 - 14579627
Alignment:
Q  188 gtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtgaca 275  Q
    ||||||||||||||||||||||||||| || |||||||  ||  |||||||| ||||||| |||| ||||||||| | ||||||||||    
T  14579714 gtccttaaggatttatccgcctcataagcgaatatcctctcaggatacaacaggttcttctctgacatgaatcatgtaagaggtgaca 14579627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 24041623 - 24041717
Alignment:
Q  159 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgat 253  Q
    |||||||||| |||| |||||||||||| ||| ||||| |||||| |||||||||| || |||||||   |  ||||||||||||||||||||||    
T  24041623 tatataacataaggcgtgacaaagtcactgtctttaagaatttattcgcctcataagcgcatatcctcctaggatacaacatgttcttccctgat 24041717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 19973799 - 19973737
Alignment:
Q  152 aaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 214  Q
    ||||| || |||||| |||||| |||||||||||| |||||||| ||||||||||||||||||    
T  19973799 aaacatatgtataacctgaggcgtgacaaagtcactgtccttaaagatttatccgcctcataa 19973737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 275
Target Start/End: Original strand, 19697847 - 19697955
Alignment:
Q  168 tgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcat-atc 265  Q
    |||||| ||||| |||||  |||||| ||||||| ||||||||||||| || |||||||  ||  |||||||| ||||||||| | |||||||||| |||    
T  19697847 tgaggcgtgacatagtcattgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatcataatc 19697945  T
Q  266 agaggtgaca 275  Q
     |||||||||    
T  19697946 ggaggtgaca 19697955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 31767445 - 31767557
Alignment:
Q  163 taacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcat 262  Q
    ||||||||||| ||||||| ||||  |||||||||||||||||||||||||| |  |||||||   |  ||||||||||||||||||||||||||||||     
T  31767445 taacatgaggcgtgacaaaatcactatccttaaggatttatccgcctcataagcacatatcctcctaggatacaacatgttcttccctgatatgaatcac 31767544  T
Q  263 atcagaggtgaca 275  Q
    |||||||||||||    
T  31767545 atcagaggtgaca 31767557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 275
Target Start/End: Original strand, 13250497 - 13250635
Alignment:
Q  138 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcc-tggcaaaataca 236  Q
    |||||||||||| ||| |   ||||||||||||||| ||||||||||||  ||||||| ||||||||| |||||||| || |||||| |   |  |||||    
T  13250497 acctgcaaaatagtaagccgttatataacatgaggcgtgacaaagtcactctccttaaagatttatccacctcataagcgcatatccttcttaggataca 13250596  T
Q  237 acatgttcttccctgatatgaatcatatcagaggtgaca 275  Q
    | ||||||||||||||||||||||| ||||| |||||||    
T  13250597 atatgttcttccctgatatgaatcacatcagtggtgaca 13250635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 43287970 - 43287856
Alignment:
Q  162 ataacatgaggcatgacaaagtcaccgtccttaa-ggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatc 260  Q
    |||||||||||| |||||||||||| |||||||| |||||||| |||||||||| || ||||| |  ||  ||||||||| |||||| | ||||||||||    
T  43287970 ataacatgaggcgtgacaaagtcactgtccttaaaggatttattcgcctcataagcgcatatctttccaggatacaacatattcttctcagatatgaatc 43287871  T
Q  261 atatcagaggtgaca 275  Q
    | |||||||||||||    
T  43287870 acatcagaggtgaca 43287856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 136 - 273
Target Start/End: Complemental strand, 895590 - 895453
Alignment:
Q  136 taacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaata 234  Q
    |||||||||||||| |||||   ||| |||| |||| | ||||| |||||| |||||| ||||||| ||||||||||||| || |||||||  ||  |||    
T  895590 taacctgcaaaatagtaaactgttatctaacctgagtcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggata 895491  T
Q  235 caacatgttcttccctgatatgaatcatatcagaggtga 273  Q
    ||| | |||||||||| ||||||||||||||||||||||    
T  895490 caaaa-gttcttccctaatatgaatcatatcagaggtga 895453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 4747332 - 4747204
Alignment:
Q  138 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaa 237  Q
    |||||||||| | ||||| | || ||||  |||||| |||| ||||||| ||| ||||||||| ||   |||||||| ||||||||||  ||| ||||||    
T  4747332 acctgcaaaacagtaaaccattaaataatctgaggcgtgacgaagtcactgtc-ttaaggattcatggacctcataagcgtatatcctcccaagatacaa 4747234  T
Q  238 catgttcttccctgatatgaatcatatcag 267  Q
    || ||||||| ||  |||||||||||||||    
T  4747233 caggttcttcgcttgtatgaatcatatcag 4747204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 13010526 - 13010593
Alignment:
Q  159 tatataacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcct 225  Q
    |||||||| |||||| ||||| |||||| |||||| ||||||| ||||||||||||| || |||||||    
T  13010526 tatataacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcct 13010593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 43472224 - 43472112
Alignment:
Q  162 ataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 261  Q
    |||||||||||  ||||||| |||| ||||||| |||||||| |||||||||| |    |||||   |  |||||||||||||||||| ||| | |||||    
T  43472224 ataacatgaggtgtgacaaaatcactgtccttagggatttattcgcctcataagcacgcatcctcctaggatacaacatgttcttcccagatct-aatca 43472126  T
Q  262 tatcagaggtgaca 275  Q
     |||||||||||||    
T  43472125 catcagaggtgaca 43472112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 6667721 - 6667816
Alignment:
Q  168 tgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcata 263  Q
    |||||| ||||| |||||| || ||| ||||||| ||||||||||||| || |||||||  ||  |||||||| ||||||||| | |||||||||||    
T  6667721 tgaggcgtgacatagtcactgttcttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatcata 6667816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 44643572 - 44643473
Alignment:
Q  163 taacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcat 262  Q
    |||| |||||| ||||| |||||| |||||| ||  | |||||||||||||| || |||||||   |  |||||||| ||||||||| ||||||||||||    
T  44643572 taacctgaggcgtgacatagtcactgtccttcagattctatccgcctcataagcgcatatcctcctaggatacaaca-gttcttccccgatatgaatcat 44643474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 136 - 275
Target Start/End: Complemental strand, 110268 - 110129
Alignment:
Q  136 taacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaata 234  Q
    |||||||||||||| ||| |   ||| ||||||||||| ||||| |||||| |||||| ||||||| ||||||||||||| || |||||||  ||| |||    
T  110268 taacctgcaaaatagtaatctgttatctaacatgaggcgtgacatagtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagata 110169  T
Q  235 caacatgttcttccctgatatgaatcatatcagaggtgaca 275  Q
    ||||| ||||||| |||||||||||||| ||||||||||||    
T  110168 caaca-gttcttcgctgatatgaatcatgtcagaggtgaca 110129  T

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Target: scaffold0028; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 127820 - 127708
Alignment:
Q  163 taacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 261  Q
    |||| |||||| ||||| |||||| |||||| ||||||| |||||||||| || || |||||||  ||  |||||||| |||||||||||||||||||||    
T  127820 taacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcagaaacgcatatcctcccatgatacaaca-gttcttccctgatatgaatca 127722  T
Q  262 tatcagaggtgaca 275  Q
    | ||||||||||||    
T  127721 tgtcagaggtgaca 127708  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 13292068 - 13291963
Alignment:
Q  168 tgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcag 267  Q
    ||||||||||| |||| || |||||||| |||||||||||||||||| || |||||||  ||  |||||||| ||| ||| |||||||||||||||||||    
T  13292068 tgaggcatgacgaagttactgtccttaaagatttatccgcctcataagcgcatatcctcccaggatacaacaggttattctctgatatgaatcatatcag 13291969  T
Q  268 aggtga 273  Q
    ||||||    
T  13291968 aggtga 13291963  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 262
Target Start/End: Complemental strand, 39292250 - 39292120
Alignment:
Q  132 tatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaagga-tttatccgcctcataatcgtatatcctggcaa 230  Q
    |||||||||||||||| ||||||| | ||| |||| |||||  ||| | |||||| ||||||||||| |||||||||||||||| || |||||||  ||     
T  39292250 tatgtaacctgcaaaacaataaaccattatctaacctgaggtgtgatatagtcactgtccttaaggattttatccgcctcataagcgcatatccttccag 39292151  T
Q  231 aatacaacatgttcttccctgatatgaatcat 262  Q
    ||||||||| ||||||| | | ||||||||||    
T  39292150 aatacaaca-gttcttctccgttatgaatcat 39292120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 26703032 - 26703113
Alignment:
Q  181 agtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 261  Q
    |||||| |||||| ||||||| ||||||||||||| || |||||||  ||| |||||||| ||||||| ||| |||||||||    
T  26703032 agtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacaagttcttctctggtatgaatca 26703113  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 26972765 - 26972846
Alignment:
Q  181 agtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatca 261  Q
    |||||| |||||| ||||||| ||||||||||||| || |||||||  ||| |||||||| ||||||| ||| |||||||||    
T  26972765 agtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacaagttcttctctggtatgaatca 26972846  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 263
Target Start/End: Complemental strand, 18594995 - 18594835
Alignment:
Q  101 aactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtcctt-aaggat 199  Q
    ||||||||||| ||| |  | |||||||||||  ||||||||||||| || | || | ||| |||| |||||| |||||  ||||| |||||| |||  |    
T  18594995 aactctatcaacatcttctatcaacaactcat--gtaacctgcaaaacaaaatactattatgtaacctgaggcgtgacattgtcactgtccttgaagatt 18594898  T
Q  200 ttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcata 263  Q
    ||||||||||||||| || |||| ||  ||  |||||||| ||||||||| | |||||||||||    
T  18594897 ttatccgcctcataagcgcatattctcacaggatacaaca-gttcttccccgttatgaatcata 18594835  T

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Target: scaffold0076 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 275
Target Start/End: Original strand, 6726 - 6869
Alignment:
Q  132 tatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaa 230  Q
    |||||||||||||||| ||||||| | ||| |||  |||||| ||||| |||||| ||| || ||||||| |||||||||||||  | |||||||  ||     
T  6726 tatgtaacctgcaaaacaataaaccattatctaaactgaggcgtgacatagtcactgtcattgaggattttatccgcctcataagtgcatatccttccat 6825  T
Q  231 aatacaacatgttcttccctgatatgaatcatatcagaggtgaca 275  Q
     |||||||| ||| ||||||||||||||||||||||||| |||||    
T  6826 gatacaaca-gtttttccctgatatgaatcatatcagagatgaca 6869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 41739805 - 41739934
Alignment:
Q  94 ctgacataactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataataaacaaata------tataacatgaggcatgacaaagtcacc 187  Q
    ||||||| |||||||||||||  ||||| |||||||||||| |||||||||||||| ||||||  ||      |||||| |||||| |||  |||||||     
T  41739805 ctgacatgactctatcaatattcttcactaacaactcatatctaacctgcaaaatagtaaacagttatgtaattataacctgaggcgtgatgaagtcact 41739904  T
Q  188 gtccttaaggatttatccgcctcataatcg 217  Q
     |||||||||||||||||| ||||||||||    
T  41739905 atccttaaggatttatccgtctcataatcg 41739934  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 33940435 - 33940490
Alignment:
Q  159 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 214  Q
    |||||||| |||||| |||| ||||||| ||||||||||||||||||| |||||||    
T  33940435 tatataacctgaggcttgacgaagtcactgtccttaaggatttatccgtctcataa 33940490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 1788901 - 1788996
Alignment:
Q  168 tgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcata 263  Q
    |||||| ||||| |||||| |||||| ||||||| ||||||||||||| || |||||||  ||  |||||||| ||||||||| | |||||||||||    
T  1788901 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatcata 1788996  T

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Target: scaffold0216 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 12164 - 12121
Alignment:
Q  232 atacaacatgttcttccctgatatgaatcatatcagaggtgaca 275  Q
    |||||||| |||||||||| ||||||||||||||||||||||||    
T  12164 atacaacaagttcttcccttatatgaatcatatcagaggtgaca 12121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 4950 - 5022
Alignment:
Q  191 cttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcata 263  Q
    |||||||||||||| ||||||||| |  |||||||  ||| |||||||| |||||||  ||||||||||||||    
T  4950 cttaaggatttatctgcctcataagcacatatcctcccaagatacaacaggttcttctatgatatgaatcata 5022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 863 - 813
Alignment:
Q  164 aacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 214  Q
    |||||||||| |||||||||||| ||||||| | |||| ||||||||||||    
T  863 aacatgaggcgtgacaaagtcactgtccttaggtatttttccgcctcataa 813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 1111 - 1147
Alignment:
Q  232 atacaacatgttcttccctgatatgaatcatatcaga 268  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  1111 atacaacatgttcttccctaatatgaatcacatcaga 1147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 448809 - 448729
Alignment:
Q  192 ttaaggatttatccgcctcataatcgtatatcctggcaaaatacaacatgttcttccctgatatgaatcatatcagaggtgaca 275  Q
    |||| |||||||| |||||||||||| |||||||  |   |||||||||||||   ||| ||||||||||||||| ||||||||    
T  448809 ttaaagatttatctgcctcataatcgcatatcctctcgggatacaacatgttc---cctaatatgaatcatatcaaaggtgaca 448729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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