View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_low_193 (Length: 279)
Name: NF6864A_low_193
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_193 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 35 - 274
Target Start/End: Complemental strand, 14560142 - 14559903
Alignment:
| Q |
35 |
ctctaaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaa |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
14560142 |
ctctaaaaccaaaagtgaatcccacctcaacacttaagaaatttcaatcaattaaactcctttcatgataataacgtgtttcatatgcttgttgtgacaa |
14560043 |
T |
|
| Q |
135 |
gcttttccctccttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14560042 |
gcttttccctccttcaccaccacagttttgtgtcagtggaggtccacacaactcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
14559943 |
T |
|
| Q |
235 |
ccagtttgtatttttcccaccaagtgattacaagagaggt |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14559942 |
ccagtttgtatttttcccaccaagtgattacaagagaggt |
14559903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 47 - 274
Target Start/End: Complemental strand, 14569885 - 14569658
Alignment:
| Q |
47 |
aagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaagcttttccctcc |
146 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||| |||||||| ||| ||| || ||| ||||| || ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
14569885 |
aagtgaattccaactcaacacttaagaaattctaatcaattgaacccctgtcgtgaaaataaggtgtttcatatgcttgttgttacaagcttttccctcc |
14569786 |
T |
|
| Q |
147 |
ttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatt |
246 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||| |||||||||| | ||||| |
|
|
| T |
14569785 |
ttcaccaacacaattttgtgtcagtggaggtccacacaactctttattacctataagtgaatcttcttgaaatgattgaatttgtgttccaggtggtatt |
14569686 |
T |
|
| Q |
247 |
tttcccaccaagtgattacaagagaggt |
274 |
Q |
| |
|
||||||||||| ||| |||||||||||| |
|
|
| T |
14569685 |
tttcccaccaaatgagtacaagagaggt |
14569658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 32549371 - 32549283
Alignment:
| Q |
172 |
ggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatttttcccaccaagtg |
260 |
Q |
| |
|
||||||||| | ||| |||||||||| |||||||||||| |||||||||||| ||| ||||| |||||| ||||| ||||||||||||| |
|
|
| T |
32549371 |
ggaggtccaaatagcccttcattgccaataaatgaatctgcttgaaatgattgaatctgtgtcccagttggtattcttcccaccaagtg |
32549283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 32549498 - 32549451
Alignment:
| Q |
39 |
aaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaat |
86 |
Q |
| |
|
|||||||||||||||||||| |||| || | ||||||||||||||||| |
|
|
| T |
32549498 |
aaaaccaaaagtgaatcccaactcagcactcaagaaattccaatcaat |
32549451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University