View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_196 (Length: 276)
Name: NF6864A_low_196
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_196 |
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Alignment Details
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 5251406 - 5251170
Alignment:
| Q |
22 |
ttcattcctttgtatannnnnnncgattgttttaaaattatcatggatgaacctgtttgttaaaattgtttgcattatacacttatctttcatttccttc |
121 |
Q |
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| T |
5251406 |
ttcattcctttgtatatttttttcgattgttttaaaattatcatggatgaacctgtttgttaaaattgtttgcatta----------tttcatttccttc |
5251317 |
T |
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| Q |
122 |
gcttcatcatcgctctagtgcttaaccactattcttatgnnnnnnnnnnnnnnnnnnnncaaaaaccactatttttatgctgtaacacnnnnnnnnngtg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||| |
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| T |
5251316 |
gcttcatcatcgctctagtgcttaaccactattcttat--ttattttattattttttatcaaaaaccactattcttatgttgtaacacttgttttttgtg |
5251219 |
T |
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| Q |
222 |
ctttcagcaaagaaacattttatatataaaatccaacatcaacaccaaa |
270 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5251218 |
ctttctgcaaagaaacattttatatataaaatccaacatcaacaccaaa |
5251170 |
T |
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