View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_2 (Length: 612)

Name: NF6864A_low_2
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_2
NF6864A_low_2
[»] chr3 (5 HSPs)
chr3 (167-588)||(7779307-7779728)
chr3 (28-73)||(7779169-7779214)
chr3 (168-256)||(8713718-8713807)
chr3 (168-256)||(9065605-9065694)
chr3 (348-416)||(28730560-28730628)
[»] chr7 (7 HSPs)
chr7 (454-554)||(3738171-3738271)
chr7 (167-427)||(10924970-10925230)
chr7 (281-370)||(6724108-6724197)
chr7 (334-427)||(22334224-22334316)
chr7 (273-403)||(2978796-2978926)
chr7 (319-416)||(13709140-13709237)
chr7 (346-416)||(11082651-11082721)
[»] chr8 (5 HSPs)
chr8 (167-427)||(18789957-18790217)
chr8 (181-259)||(13581725-13581803)
chr8 (281-370)||(6887071-6887160)
chr8 (271-343)||(13528955-13529026)
chr8 (271-343)||(13618494-13618565)
[»] chr2 (4 HSPs)
chr2 (471-592)||(33125656-33125779)
chr2 (183-266)||(21243329-21243412)
chr2 (275-370)||(31275249-31275344)
chr2 (222-264)||(18932146-18932188)
[»] scaffold0029 (1 HSPs)
scaffold0029 (454-554)||(40745-40845)
[»] chr4 (1 HSPs)
chr4 (364-427)||(13066753-13066817)
[»] chr5 (3 HSPs)
chr5 (275-365)||(20100989-20101079)
chr5 (270-370)||(18179324-18179424)
chr5 (345-397)||(22642873-22642925)
[»] chr1 (4 HSPs)
chr1 (167-237)||(25664714-25664784)
chr1 (338-416)||(23506720-23506798)
chr1 (167-236)||(25132538-25132608)
chr1 (552-592)||(14150395-14150435)


Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 167 - 588
Target Start/End: Original strand, 7779307 - 7779728
Alignment:
Q  167 cttacctaacctagcctaattattgacaaaataaactctattgattactttgtcgaaatatcaagaatccccaacaacaacgccaaaaacttgttggtgt 266  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  7779307 cttacctaacctagcctaattattgacaaaataaattctattgattaccttgtcgaaatatcaacaatccccaacaacaacgccaaaaatttgttggtgt 7779406  T
Q  267 ttgtttgacaagtgcaccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggatcgtcattcaacatgataattagcagaatttatta 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||    
T  7779407 ttgtttgacaagtgcaccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggattgtcattcaacatggtaaatagcagaatttatta 7779506  T
Q  367 gaaaaacaaataaaggaaaagattgagagtgattgcagtgctttaattgttctgcccaatgtaatgcccatactaaactatctagaatagtcgggtgtta 466  Q
    | |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7779507 gcaaaacaaataaaggaaaagattgagagtgattgtcgtgctttaattgttctgcccaatgtaatgcccatactaaactatctagaatagtcgggtgtta 7779606  T
Q  467 gtcataagagaccggatagattaaaattacaacatgaattttgtttgaatgaattatattaaagcaaggtctcatacatttgatgaaagtcctaacttac 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||    
T  7779607 gtcataagagaccggatagattaaaattacaacatgaattttgtttgaatgaattatattaaagcacggtctcatacatctgatgaaagtcctaactgac 7779706  T
Q  567 gagtacaaaccataagtcgtat 588  Q
    ||||||||||||||||||||||    
T  7779707 gagtacaaaccataagtcgtat 7779728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 7779169 - 7779214
Alignment:
Q  28 gggagctatgtgttaacacaattaaaagtgaggatagaaggacgtg 73  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  7779169 gggagctatttgttaacacaattaaaagtgaggatagaaggacgtg 7779214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 8713718 - 8713807
Alignment:
Q  168 ttacctaacctagcctaattattgacaaaa-taaactctattgattactttgtcgaaatatcaagaatccccaacaacaacgccaaaaac 256  Q
    |||||||||||| |||||||| | |||||| |||| ||||  |||||| |||||| |||||||| ||||||| ||||  |||||||||||    
T  8713718 ttacctaacctaacctaattactcacaaaaataaattctaccgattaccttgtcgtaatatcaacaatccccgacaatgacgccaaaaac 8713807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 9065605 - 9065694
Alignment:
Q  168 ttacctaacctagcctaattattgacaaaa-taaactctattgattactttgtcgaaatatcaagaatccccaacaacaacgccaaaaac 256  Q
    |||||||||||| |||||||| | |||||| |||| ||||  |||||| |||||| |||||||| ||||||| ||||  |||||||||||    
T  9065605 ttacctaacctaacctaattactcacaaaaataaattctaccgattaccttgtcgtaatatcaacaatccccgacaatgacgccaaaaac 9065694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 348 - 416
Target Start/End: Original strand, 28730560 - 28730628
Alignment:
Q  348 taattagcagaatttattagaaaaacaaataaaggaaaagattgagagtgattgcagtgctttaattgt 416  Q
    ||||||||| ||||||||||||||| ||||||| || |||||| | |||| |||| | | |||||||||    
T  28730560 taattagcataatttattagaaaaagaaataaaagagaagattaatagtggttgcggggttttaattgt 28730628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 454 - 554
Target Start/End: Complemental strand, 3738271 - 3738171
Alignment:
Q  454 tagtcgggtgttagtcataagagaccggatagattaaaattacaacatgaattttgtttgaatgaattatattaaagcaaggtctcatacatttgatgaa 553  Q
    ||||||| ||||||  |||||| ||| |||| ||||||||||||||||||||||||| |||||||||||||||| ||||  |||| |||||| |||||||    
T  3738271 tagtcggatgttagatataagataccagatacattaaaattacaacatgaattttgtctgaatgaattatattagagcacagtcttatacatctgatgaa 3738172  T
Q  554 a 554  Q
    |    
T  3738171 a 3738171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 167 - 427
Target Start/End: Complemental strand, 10925230 - 10924970
Alignment:
Q  167 cttacctaacctagcctaattattgacaaaataaactctattgattactttgtcgaaatatcaagaatccccaacaacaacgccaaaaacttgttggtgt 266  Q
    ||||||||||| | |||||||||| ||||||||||   ||  |||||  | ||||||||||||| |||||    ||| ||||||||||||||| ||   |    
T  10925230 cttacctaaccaaacctaattattcacaaaataaatcttacggattatctggtcgaaatatcaataatccatggcaataacgccaaaaacttgatgaatt 10925131  T
Q  267 ttgttt--gacaagtgcaccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggatcgtcattcaacatgataattagcagaatttat 364  Q
    || ||   ||||||||||||||||| | |||||||| |||  | ||||||||| |||| |||| ||||  || ||||||  |||||| ||||||| ||||    
T  10925130 tttttatagacaagtgcaccaaatcgt-atcaagtaataaagtagtaagttatcgtcttcatagggattttcgttcaactcgataatgagcagaacttat 10925032  T
Q  365 tagaaaaacaaataaaggaaaagattgagagtgattgcagtgctttaattgttctgcccaatg 427  Q
    | ||||| |||||||| |||| ||||| ||||| |||||| | ||||||||| ||||||||||    
T  10925031 ttgaaaagcaaataaaagaaaggattg-gagtggttgcagagttttaattgtcctgcccaatg 10924970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 6724108 - 6724197
Alignment:
Q  281 caccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggatcgtcattcaacatgataattagcagaatttattagaaa 370  Q
    ||||||||||||  |||||| |||| | ||||||||| ||||| || ||||| |||||||||| || |||||||||||| || |||||||    
T  6724108 caccaaatcatacacaagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcagaaattgttagaaa 6724197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 427
Target Start/End: Original strand, 22334224 - 22334316
Alignment:
Q  334 gtcattcaacatgataattagcagaatttattagaaaaacaaataaaggaaaagattgagag-tgattgcagtgctttaattgttctgcccaatg 427  Q
    |||||||||| || |||||||| ||||||||||||||| |||||||| || |  | |||||| || |||||| | ||||||||||||||||||||    
T  22334224 gtcattcaacttggtaattagctgaatttattagaaaagcaaataaaagaga--actgagagttggttgcagggttttaattgttctgcccaatg 22334316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 403
Target Start/End: Original strand, 2978796 - 2978926
Alignment:
Q  273 gacaagtgcaccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggatcgtcattcaacatgataattagcagaatttattagaaaaa 372  Q
    ||||| ||||||||||| || |||| || |||  | ||||||| | ||||||| | |||| ||| |||||| |  |||| | || || ||||| ||||||    
T  2978796 gacaaatgcaccaaatcctactcaaataataaaatagtaagttgtcgtctccacagggattgtcgttcaactttgtaatcatcataacttatttgaaaaa 2978895  T
Q  373 caaataaaggaaaagattgagagtgattgca 403  Q
    |||||||| ||||||||||||| ||||||||    
T  2978896 caaataaaagaaaagattgagaatgattgca 2978926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 319 - 416
Target Start/End: Complemental strand, 13709237 - 13709140
Alignment:
Q  319 gtctccataaggatcgtcattcaacatgataattagcagaatttattagaaaaacaaataaaggaaaagattgagagtgattgcagtgctttaattgt 416  Q
    ||||||||| ||||| || ||||||  | |||||||  |||||||||  |||| ||||||||| ||||||||||||||| |||||  | |||||||||    
T  13709237 gtctccatagggatcatcgttcaactgggtaattagtggaatttattcaaaaagcaaataaagaaaaagattgagagtggttgcatggttttaattgt 13709140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 416
Target Start/End: Complemental strand, 11082721 - 11082651
Alignment:
Q  346 gataattagcagaatttattagaaaaacaaataaaggaaaagattgagagtgattgcagtgctttaattgt 416  Q
    ||||||||||| ||||||||||||||  ||||||| ||||||||| | |||  |||||| | |||||||||    
T  11082721 gataattagcataatttattagaaaatgaaataaaagaaaagattaatagttgttgcagggttttaattgt 11082651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 167 - 427
Target Start/End: Complemental strand, 18790217 - 18789957
Alignment:
Q  167 cttacctaacctagcctaattattgacaaaataaactctattgattactttgtcgaaatatcaagaatccccaacaacaacgccaaaaacttgttggtgt 266  Q
    ||||||||||| | |||||||||| ||||||||||   ||  |||||  | ||||||||||||| |||||    ||| ||||||||||||||| ||   |    
T  18790217 cttacctaaccaaacctaattattcacaaaataaatcttacggattatctggtcgaaatatcaataatccatggcaataacgccaaaaacttgatgaatt 18790118  T
Q  267 ttgttt--gacaagtgcaccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggatcgtcattcaacatgataattagcagaatttat 364  Q
    || ||   ||||||||||||||||| | |||||||| |||  | ||||||||| |||| |||| ||||  || ||||||  |||||| ||||||| ||||    
T  18790117 tttttatagacaagtgcaccaaatcgt-atcaagtaataaagtagtaagttatcgtcttcatagggattttcgttcaactcgataatgagcagaacttat 18790019  T
Q  365 tagaaaaacaaataaaggaaaagattgagagtgattgcagtgctttaattgttctgcccaatg 427  Q
    | ||||| |||||||| |||| ||||| ||||| |||||| | ||||||||| ||||||||||    
T  18790018 ttgaaaagcaaataaaagaaaggattg-gagtggttgcagagttttaattgtcctgcccaatg 18789957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 13581725 - 13581803
Alignment:
Q  181 cctaattattgacaaaataaactctattgattactttgtcgaaatatcaagaatccccaacaacaacgccaaaaacttg 259  Q
    |||||||||| |||||||||| |||||||||||  || |||||||||||| ||||||  |||||| || ||||||||||    
T  13581725 cctaattattcacaaaataaattctattgattaacttttcgaaatatcaacaatcccggacaacagcgtcaaaaacttg 13581803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 6887071 - 6887160
Alignment:
Q  281 caccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggatcgtcattcaacatgataattagcagaatttattagaaa 370  Q
    ||||||||||||  |||||| |||  | ||||||||| ||||||| |||||| ||| |||||| || |||||||| ||||||||||||||    
T  6887071 caccaaatcatacccaagtattaaattagtaagttatcgtctccacaaggattgtcgttcaacttggtaattagcggaatttattagaaa 6887160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 13528955 - 13529026
Alignment:
Q  271 ttgacaagtgcaccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggatcgtcattcaac 343  Q
    |||| ||||||||||||||||||| ||||| |||  | ||||||||| ||||||||| |||| ||||||||||    
T  13528955 ttgataagtgcaccaaatcataat-aagtaataaagtagtaagttatcgtctccatatggattgtcattcaac 13529026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 13618494 - 13618565
Alignment:
Q  271 ttgacaagtgcaccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggatcgtcattcaac 343  Q
    |||| ||||||||||||||||||| ||||| |||  | ||||||||| ||||||||| |||| ||||||||||    
T  13618494 ttgataagtgcaccaaatcataat-aagtaataaagtagtaagttatcgtctccatatggattgtcattcaac 13618565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 471 - 592
Target Start/End: Complemental strand, 33125779 - 33125656
Alignment:
Q  471 taagagaccggatagattaaaattacaacatgaattttgtttg-aatgaattatattaaagcaaggtctcatacatttgatg-aaagtcctaacttacga 568  Q
    ||||| || ||||| ||||||||||||||||||||||||| || ||||||||||||| |||||  ||||||||||| ||| | ||| | |||| | ||||    
T  33125779 taagatactggatatattaaaattacaacatgaattttgtctgaaatgaattatattcaagcacagtctcatacatctgaggaaaaatgctaattgacga 33125680  T
Q  569 gtacaaaccataagtcgtatctga 592  Q
    |||||||||||||| |||||||||    
T  33125679 gtacaaaccataagccgtatctga 33125656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 21243412 - 21243329
Alignment:
Q  183 taattattgacaaaataaactctattgattactttgtcgaaatatcaagaatccccaacaacaacgccaaaaacttgttggtgt 266  Q
    |||||||| |||||||||| |||| ||||| | ||||| ||||||||| ||||  | | || || |||||||||||||||||||    
T  21243412 taattattcacaaaataaattctactgattcccttgtcaaaatatcaataatcatcgataataatgccaaaaacttgttggtgt 21243329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 370
Target Start/End: Complemental strand, 31275344 - 31275249
Alignment:
Q  275 caagtgcaccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggatcgtcattcaacatgataattagcagaatttattagaaa 370  Q
    ||||||||||||||| ||| |||||| |||  | ||||||||| |||||||||||||| ||  ||| || || ||| ||| |||| ||||||||||    
T  31275344 caagtgcaccaaatcgtaaacaagtaataaagtagtaagttatcgtctccataaggattgttgttccacttggtaaatagaagaacttattagaaa 31275249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 18932146 - 18932188
Alignment:
Q  222 aaatatcaagaatccccaacaacaacgccaaaaacttgttggt 264  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||    
T  18932146 aaatatcaacaatccccgacaacaacgccaaaaacttgatggt 18932188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 454 - 554
Target Start/End: Complemental strand, 40845 - 40745
Alignment:
Q  454 tagtcgggtgttagtcataagagaccggatagattaaaattacaacatgaattttgtttgaa-tgaattatattaaagcaaggtctcatacatttgatga 552  Q
    |||||||||||||  ||||||| || ||||| |||||| ||||||||||||||||||  ||| |||||||||||||||||  ||||||||||| ||||||    
T  40845 tagtcgggtgttaaacataagatactggatatattaaa-ttacaacatgaattttgtccgaaatgaattatattaaagcacagtctcatacatctgatga 40747  T
Q  553 aa 554  Q
    ||    
T  40746 aa 40745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 364 - 427
Target Start/End: Complemental strand, 13066817 - 13066753
Alignment:
Q  364 ttagaaaaacaaataaaggaaaaga-ttgagagtgattgcagtgctttaattgttctgcccaatg 427  Q
    ||||||||||||||||||||||||| || ||||||||||||| | ||||||||| ||||||||||    
T  13066817 ttagaaaaacaaataaaggaaaagatttaagagtgattgcagggttttaattgtcctgcccaatg 13066753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 275 - 365
Target Start/End: Complemental strand, 20101079 - 20100989
Alignment:
Q  275 caagtgcaccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggatcgtcattcaacatgataattagcagaatttatt 365  Q
    |||||||| ||||||||| ||||||| |||  | |||||||||||||||||||||||| ||| |||||| || || ||||  |||||||||    
T  20101079 caagtgcatcaaatcatactcaagtaataaagtagtaagttatagtctccataaggattgtcgttcaacttggtagttagatgaatttatt 20100989  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 18179424 - 18179324
Alignment:
Q  270 tttgacaagtgcaccaaatcataatcaagtagtaagcttgtaagttatagtctccataaggatcgtcattcaacatgataattagcagaatttattagaa 369  Q
    |||| |||||||| |||||||||| |||||| |||  | ||||||||| || |||||| | ||  || |||||| || ||| ||||||||||||||||||    
T  18179424 tttggcaagtgcatcaaatcataaacaagtaataaagtagtaagttattgtatccatatgcattatctttcaacttggtaaatagcagaatttattagaa 18179325  T
Q  370 a 370  Q
    |    
T  18179324 a 18179324  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 22642873 - 22642925
Alignment:
Q  345 tgataattagcagaatttattagaaaaacaaataaaggaaaagattgagagtg 397  Q
    ||||||||||| ||| ||||||||||| ||||||||  | |||||||||||||    
T  22642873 tgataattagcggaacttattagaaaagcaaataaaaaagaagattgagagtg 22642925  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 25664714 - 25664784
Alignment:
Q  167 cttacctaacctagcctaattattgacaaaataaactctattgattactttgtcgaaatatcaagaatccc 237  Q
    |||||||||||||  ||||||||| |||||||||| ||||  |||||| ||||||||||||||| ||||||    
T  25664714 cttacctaacctaagctaattattcacaaaataaattctaccgattaccttgtcgaaatatcaacaatccc 25664784  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 416
Target Start/End: Complemental strand, 23506798 - 23506720
Alignment:
Q  338 ttcaacatgataattagcagaatttattagaaaaacaaataaaggaaaagattgagagtgattgcagtgctttaattgt 416  Q
    |||||| || |||||||||||||||||||||||| |||||||| |||| || |||  ||| ||||| || |||||||||    
T  23506798 ttcaacttggtaattagcagaatttattagaaaagcaaataaaagaaaggagtgattgtggttgcactgttttaattgt 23506720  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 25132538 - 25132608
Alignment:
Q  167 cttacctaacctagcctaattattgac-aaaataaactctattgattactttgtcgaaatatcaagaatcc 236  Q
    |||||||||||||  ||||||||| || |||||||| |||| ||||||| |||| |||||||||| |||||    
T  25132538 cttacctaacctaaactaattattcacaaaaataaattctactgattaccttgttgaaatatcaacaatcc 25132608  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 592
Target Start/End: Complemental strand, 14150435 - 14150395
Alignment:
Q  552 aaagtcctaacttacgagtacaaaccataagtcgtatctga 592  Q
    ||||| |||||| ||||||||||||||||||| ||||||||    
T  14150435 aaagtactaactgacgagtacaaaccataagttgtatctga 14150395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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