View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_206 (Length: 270)

Name: NF6864A_low_206
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_206
NF6864A_low_206
[»] chr7 (10 HSPs)
chr7 (16-251)||(1595498-1595733)
chr7 (16-251)||(1541953-1542188)
chr7 (118-226)||(1105427-1105535)
chr7 (16-230)||(1557897-1558105)
chr7 (117-230)||(1603846-1603962)
chr7 (145-239)||(3956074-3956168)
chr7 (16-78)||(1604001-1604063)
chr7 (177-226)||(1551375-1551424)
chr7 (129-230)||(2329174-2329275)
chr7 (129-230)||(2337073-2337174)
[»] chr8 (6 HSPs)
chr8 (16-226)||(18749649-18749853)
chr8 (16-226)||(18723997-18724201)
chr8 (118-230)||(18739865-18739977)
chr8 (118-230)||(18744829-18744941)
chr8 (21-74)||(18739729-18739782)
chr8 (21-74)||(18744693-18744746)
[»] scaffold0491 (3 HSPs)
scaffold0491 (16-226)||(6490-6694)
scaffold0491 (118-230)||(1744-1856)
scaffold0491 (21-74)||(1608-1661)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 1595733 - 1595498
Alignment:
Q  16 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaacgaacatccatcataattttcccttgttgttgtgtta 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||  |||||| | |||| |||||| ||||| |||||||||||||||||||||||    
T  1595733 gacaacaatgtgctttaatttattatttttcttgtgtggtgaccaaggctggaatttgctaaatgaacatacatcagaattttcccttgttgttgtgtta 1595634  T
Q  116 agctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattat 215  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1595633 agctgaagacaacttggaaagggaccctccaaacaattgtatgaaatgtccacataatagacattacagagagattggggaattgtgccagtgagattat 1595534  T
Q  216 tattgcttaaattaaatctgtaaatgtagacaatat 251  Q
    ||||||||||||||||||||||||||||||||||||    
T  1595533 tattgcttaaattaaatctgtaaatgtagacaatat 1595498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 1541953 - 1542188
Alignment:
Q  16 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaacgaacatccatcataattttcccttgttgttgtgtta 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| | |||| ||||||| ||||| ||  ||||||| | |    
T  1541953 gacaacaatgtgctttaatttattatttttcttgtgtggtgaccaaggctggaattggttaaatggacatacatcatagttttcgctgtttgttgtataa 1542052  T
Q  116 agctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattat 215  Q
    ||   | ||||| |||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||    
T  1542053 agaccaggacaatttggaatgggaccctccaaacaattgtatgaaatgtccacataattgacatcacagagagattggggaattgttccagtgagattat 1542152  T
Q  216 tattgcttaaattaaatctgtaaatgtagacaatat 251  Q
    |||||||||||||||   ||||||||||| ||||||    
T  1542153 tattgcttaaattaaggttgtaaatgtagtcaatat 1542188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 1105535 - 1105427
Alignment:
Q  118 ctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattatta 217  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  1105535 ctgaagacaatttggaatgggaccctccaaacaattgtatgaaatgtccacataatcgacattacagagagattggggaattgttccagtgagattatta 1105436  T
Q  218 ttgcttaaa 226  Q
    |||||||||    
T  1105435 ttgcttaaa 1105427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 1557897 - 1558105
Alignment:
Q  16 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaacgaacatccatcataattttcccttgttgttgtgtta 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||  |||||| |||||| |||||| ||||| ||||||||             ||    
T  1557897 gacaacaatgtgctttaatttattatttttcttgtgtggtgaccaaggctggaatttgttaaatgaacatacatcagaattttcc------------ata 1557984  T
Q  116 agctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataat------aggcattacagagagattggggaattgtgccagtga 209  Q
     | | ||||||| |||||| ||||||||||||||||||||||||||||||||||||||      |   |||||||||||||||||||||||| |||||||    
T  1557985 tgatcaagacaatttggaatgggaccctccaaacaattgtatgaaatgtccacataataattgaataaattacagagagattggggaattgttccagtga 1558084  T
Q  210 gattattattgcttaaattaa 230  Q
    |||||||||||||||||||||    
T  1558085 gattattattgcttaaattaa 1558105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 1603962 - 1603846
Alignment:
Q  117 gctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataata---ggcattacagagagattggggaattgtgccagtgagatt 213  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||   |  |||||||||||||||||||||||| |||| ||||||    
T  1603962 gctgaagacaatttggaatgggatcctccaaacaattgtatgaaatgtccacataataatagaaattacagagagattggggaattgttccagagagatt 1603863  T
Q  214 attattgcttaaattaa 230  Q
    |||||||||||||||||    
T  1603862 attattgcttaaattaa 1603846  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 3956074 - 3956168
Alignment:
Q  145 caaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattattattgcttaaattaaatctgtaaa 239  Q
    |||||||||||| |||||||||| |||| |  ||||||||||||||||||| || || ||| ||||||||||||| |||||||||| | ||||||    
T  3956074 caaacaattgtaagaaatgtccagataaaaaacattacagagagattggggtatcgttccactgagattattattacttaaattaagtttgtaaa 3956168  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 1604063 - 1604001
Alignment:
Q  16 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaa 78  Q
    |||| |||||||||||||||| |||||||||||||||  || ||||||  |||||||||||||    
T  1604063 gacaacaatgtgctttaattttttatttttcttgtgtattggccaaggatggaattggttaaa 1604001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 1551375 - 1551424
Alignment:
Q  177 cattacagagagattggggaattgtgccagtgagattattattgcttaaa 226  Q
    ||||||| | ||| ||||||||||| |||||||||||||||| |||||||    
T  1551375 cattacaaatagaatggggaattgttccagtgagattattatggcttaaa 1551424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 2329275 - 2329174
Alignment:
Q  129 ttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattattattgcttaaatt 228  Q
    ||||||| |||||||  |||  |||| | |||||||||||||||| | ||||||| |||||||||||||     || || ||||||||||| ||||||||    
T  2329275 ttggaagaggaccctttaaatgattgaaggaaatgtccacataattgacattacaaagagattggggaaacactcctgtaagattattattccttaaatt 2329176  T
Q  229 aa 230  Q
    ||    
T  2329175 aa 2329174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 2337174 - 2337073
Alignment:
Q  129 ttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattattattgcttaaatt 228  Q
    ||||||| |||||||  |||  |||| | |||||||||||||||| | ||||||| |||||||||||||     || || ||||||||||| ||||||||    
T  2337174 ttggaagaggaccctttaaatgattgaaggaaatgtccacataattgacattacaaagagattggggaaacactcctgtaagattattattccttaaatt 2337075  T
Q  229 aa 230  Q
    ||    
T  2337074 aa 2337073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 18749649 - 18749853
Alignment:
Q  16 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaacgaacatccatcataattttcccttgttgttgtgtta 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||  |||| |||||||| |  | |||||        
T  18749649 gacaacaatgtgctttaatttattatttttcttgtgtggtgaccaaggttggaactggttaaatgaacatatatcagaattttccatcttcgttgt---- 18749744  T
Q  116 agctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattat 215  Q
      |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| |||||||||||||    
T  18749745 --ctgaagacaaattggaatgggacccttcaaacaattgtatgaaatgtccacataaatgacattgcagagagattggggaattgttccagtgagattat 18749842  T
Q  216 tattgcttaaa 226  Q
    |||| ||||||    
T  18749843 tatttcttaaa 18749853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 18723997 - 18724201
Alignment:
Q  16 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaacgaacatccatcataattttcccttgttgttgtgtta 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||| |||||||  |  | ||||| |      
T  18723997 gacaacaatgtgctttaatttattatttttcttgtgtggtgaccaaggttggaactggttaaatgaacatacatcagaattttcgatcttcgttgtat-- 18724094  T
Q  116 agctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattat 215  Q
        |||||||| |||||| |||||||| ||||||||||||||||||||||||||||  | | ||||||||||||||||||||||| |||||||||||||    
T  18724095 ----gaagacaatttggaatgggacccttcaaacaattgtatgaaatgtccacataaatgactttacagagagattggggaattgttccagtgagattat 18724190  T
Q  216 tattgcttaaa 226  Q
    |||| ||||||    
T  18724191 tatttcttaaa 18724201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 18739865 - 18739977
Alignment:
Q  118 ctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattatta 217  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  18739865 ctgaagacaatttggaatgggaccctccaaacaattgtatgaaatgtccacataatagacattacagagagattggggaattgttccagtgagattatta 18739964  T
Q  218 ttgcttaaattaa 230  Q
    |||||||||||||    
T  18739965 ttgcttaaattaa 18739977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 18744829 - 18744941
Alignment:
Q  118 ctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattatta 217  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  18744829 ctgaagacaatttggaatgggaccctccaaacaattgtatgaaatgtccacataatagacattacagagagattggggaattgttccagtgagattatta 18744928  T
Q  218 ttgcttaaattaa 230  Q
    |||||||||||||    
T  18744929 ttgcttaaattaa 18744941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 18739729 - 18739782
Alignment:
Q  21 caatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggt 74  Q
    |||||||||||||||| |||||||||||||||| || ||||||  |||||||||    
T  18739729 caatgtgctttaattttttatttttcttgtgtgttggccaaggatggaattggt 18739782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 18744693 - 18744746
Alignment:
Q  21 caatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggt 74  Q
    |||||||||||||||| |||||||||||||||| || ||||||  |||||||||    
T  18744693 caatgtgctttaattttttatttttcttgtgtgttggccaaggatggaattggt 18744746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 6490 - 6694
Alignment:
Q  16 gacatcaatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggttaaacgaacatccatcataattttcccttgttgttgtgtta 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||||| |||||||  |  | ||||| |      
T  6490 gacaacaatgtgctttaatttattatttttcttgtgtggtgaccaaggttggaactggttaaatgaacatacatcagaattttcgatcttcgttgtat-- 6587  T
Q  116 agctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattat 215  Q
        |||||||| |||||| |||||||| ||||||||||||||||||||||||||||  | | ||||||||||||||||||||||| |||||||||||||    
T  6588 ----gaagacaatttggaatgggacccttcaaacaattgtatgaaatgtccacataaatgactttacagagagattggggaattgttccagtgagattat 6683  T
Q  216 tattgcttaaa 226  Q
    |||| ||||||    
T  6684 tatttcttaaa 6694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 1744 - 1856
Alignment:
Q  118 ctgaagacaacttggaaggggaccctccaaacaattgtatgaaatgtccacataataggcattacagagagattggggaattgtgccagtgagattatta 217  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  1744 ctgaagacaatttggaatgggaccctccaaacaattgtatgaaatgtccacataatagacattacagagagattggggaattgttccagtgagattatta 1843  T
Q  218 ttgcttaaattaa 230  Q
    |||||||||||||    
T  1844 ttgcttaaattaa 1856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 1608 - 1661
Alignment:
Q  21 caatgtgctttaatttattatttttcttgtgtggtgaccaaggtgggaattggt 74  Q
    |||||||||||||||| |||||||||||||||| || ||||||  |||||||||    
T  1608 caatgtgctttaattttttatttttcttgtgtgttggccaaggatggaattggt 1661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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