View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_211 (Length: 268)
Name: NF6864A_low_211
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_211 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 39695097 - 39695350
Alignment:
| Q |
8 |
tcaagtatattcttagcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcc |
107 |
Q |
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| T |
39695097 |
tcaagtatattcttagcaactccaatagcaatccaaagttgcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcc |
39695196 |
T |
|
| Q |
108 |
cagctagttctgtttctgttattgtcttaatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaa |
207 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695197 |
cagctagttctgtttctgttatagtcttgatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaa |
39695296 |
T |
|
| Q |
208 |
aatgcctatgccgctccaacgaataggagtaggacatgtgttgaatattcttgg |
261 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
39695297 |
aatgcctatgccgctccaacgaataggagcaggacatgtgttgactgttcttgg |
39695350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 39935018 - 39934765
Alignment:
| Q |
8 |
tcaagtatattcttagcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcc |
107 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
39935018 |
tcaagtatattcctatcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcggtctttaggaccccattttaaaatcc |
39934919 |
T |
|
| Q |
108 |
cagctagttctgtttctgttattgtcttaatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaa |
207 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || ||| ||||||||||| ||||| | || |
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| T |
39934918 |
cagctagttttgtttctgttattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattaccggcaa |
39934819 |
T |
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| Q |
208 |
aatgcctatgccgctccaacgaataggagtaggacatgtgttgaatattcttgg |
261 |
Q |
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| | |||||||||||| |||||||||| |||||||||||||| | ||||||| |
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| T |
39934818 |
atcacttatgccgctccagcgaataggagcaggacatgtgttgactgttcttgg |
39934765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 39704009 - 39704262
Alignment:
| Q |
8 |
tcaagtatattcttagcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||||||| ||||| | |
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| T |
39704009 |
tcaagtatattcttagcaactccaatagcaatccaaagtagtgtgacggtacttcaagctttagccatggatcgctcattaggaccccatttcaaaattc |
39704108 |
T |
|
| Q |
108 |
cagctagttctgtttctgttattgtcttaatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaa |
207 |
Q |
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||||| |||||||||||||||| ||| |||||||| || ||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||| | || |
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| T |
39704109 |
cagctggttctgtttctgttatagtcataatatcaacatccattttcctcacctttcttgacagagtgctattgccatgttggcataagattactggaaa |
39704208 |
T |
|
| Q |
208 |
aatgcctatgccgctccaacgaataggagtaggacatgtgttgaatattcttgg |
261 |
Q |
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|| ||||||||| || |||||||||||||||||||||||||||| | ||||||| |
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| T |
39704209 |
aacgcctatgccacttcaacgaataggagtaggacatgtgttgactgttcttgg |
39704262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 57 - 261
Target Start/End: Complemental strand, 39929317 - 39929113
Alignment:
| Q |
57 |
tacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgttattgtcttaatatcagcacccattttcct |
156 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
39929317 |
tacttcaagctttagtcatggatcgttctttaggataccattttgaaatcccagctggttctatttctgttatagtcttaatatcagcacccattttcct |
39929218 |
T |
|
| Q |
157 |
cacatttcttgacagagtgctattaccaggttggcataaggttaccaggaaaatgcctatgccgctccaacgaataggagtaggacatgtgttgaatatt |
256 |
Q |
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||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||| |||| || |||||| | ||||||||||||||||||||| ||| || |
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| T |
39929217 |
cacttttcttgacagggtgctattgccaagttggcataaggttaccagaaaatctcctaagctgctccatcaaataggagtaggacatgtgttcaatgtt |
39929118 |
T |
|
| Q |
257 |
cttgg |
261 |
Q |
| |
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||||| |
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| T |
39929117 |
cttgg |
39929113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 251
Target Start/End: Complemental strand, 38062001 - 38061800
Alignment:
| Q |
54 |
ttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgttatt---gtcttaatatcagcacccat |
150 |
Q |
| |
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|||||||||||| |||| ||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||| || ||||||||| || | || |
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| T |
38062001 |
ttgtacttcaagatttaatcatggatcgttctgtaggatctcattttaaaatcccagctggttctgtttctgttattatagtgttaatatcaacatctat |
38061902 |
T |
|
| Q |
151 |
tttcctcacatttcttgacagagtgctattaccaggttggcataaggttacc-aggaaaatgcctatgccgctccaacgaataggagtaggacatgtgtt |
249 |
Q |
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||||||||| ||||||||||||||| |||| ||||||||| ||| | | ||| | |||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
38061901 |
tttcctcacctttcttgacagagtgttattgccaggttggaatacgataaccgaaaaaaaagcctatgccgctccaacgaataggagtaggctatgtgtt |
38061802 |
T |
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| Q |
250 |
ga |
251 |
Q |
| |
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|| |
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|
| T |
38061801 |
ga |
38061800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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