View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_218 (Length: 266)

Name: NF6864A_low_218
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_218
NF6864A_low_218
[»] chr1 (1 HSPs)
chr1 (6-261)||(36314413-36314671)
[»] chr8 (21 HSPs)
chr8 (89-213)||(19345334-19345458)
chr8 (89-213)||(19503885-19504009)
chr8 (101-213)||(19337681-19337793)
chr8 (114-213)||(19355714-19355813)
chr8 (90-213)||(19468410-19468533)
chr8 (90-213)||(19555331-19555454)
chr8 (102-216)||(19410958-19411072)
chr8 (102-216)||(19457977-19458091)
chr8 (102-216)||(19522987-19523101)
chr8 (90-195)||(19404923-19405028)
chr8 (96-193)||(19376801-19376898)
chr8 (102-213)||(19592308-19592416)
chr8 (102-216)||(19469355-19469466)
chr8 (102-216)||(19540279-19540390)
chr8 (11-187)||(19390685-19390864)
chr8 (105-187)||(19172660-19172742)
chr8 (102-200)||(19287901-19287999)
chr8 (124-171)||(19371145-19371192)
chr8 (11-62)||(19410882-19410933)
chr8 (11-62)||(19457901-19457952)
chr8 (11-62)||(19523126-19523177)
[»] chr6 (1 HSPs)
chr6 (90-186)||(19543241-19543337)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 36314671 - 36314413
Alignment:
Q  6 tttggagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagtggtgatgaagacaatgctagtggagaaattggaaatg 105  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36314671 tttgaagttaaagatgggaagtttatatgatgggagctatcctcgaagggcaagttaacaagtggtgttgaagacaatgctagtggagaaattggaaatg 36314572  T
Q  106 cagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtggg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314571 cagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtggg 36314472  T
Q  206 aacacc---aagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggtt 261  Q
    ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314471 aacaccaaaaagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggtt 36314413  T

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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 19345334 - 19345458
Alignment:
Q  89 tggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtt 188  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  19345334 tggagatattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaattgtagggaaaatggtgaggtt 19345433  T
Q  189 tttcagaaaaaggtgggaacaccaa 213  Q
    |||||||||| ||||||||||||||    
T  19345434 tttcagaaaatggtgggaacaccaa 19345458  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 19504009 - 19503885
Alignment:
Q  89 tggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtt 188  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  19504009 tggagagattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaattgtagggaaaatggtgaggtt 19503910  T
Q  189 tttcagaaaaaggtgggaacaccaa 213  Q
    ||||||||||  | |||||||||||    
T  19503909 tttcagaaaattgcgggaacaccaa 19503885  T

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Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 19337681 - 19337793
Alignment:
Q  101 aaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 200  Q
    ||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |    
T  19337681 aaatgcagacatgtgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaatg 19337780  T
Q  201 gtgggaacaccaa 213  Q
    ||||||| |||||    
T  19337781 gtgggaagaccaa 19337793  T

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Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 19355714 - 19355813
Alignment:
Q  114 tgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaa 213  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  19355714 tgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaaaggtgggaagaccaa 19355813  T

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Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 19468533 - 19468410
Alignment:
Q  90 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 189  Q
    ||||| |||| |||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  |    
T  19468533 ggagatattgtaaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggt 19468434  T
Q  190 ttcagaaaaaggtgggaacaccaa 213  Q
    |||||||||||| ||||| |||||    
T  19468433 ttcagaaaaaggcgggaagaccaa 19468410  T

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Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 19555454 - 19555331
Alignment:
Q  90 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 189  Q
    ||||| |||| |||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  |    
T  19555454 ggagatattgtaaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggt 19555355  T
Q  190 ttcagaaaaaggtgggaacaccaa 213  Q
    |||||||||||| ||||| |||||    
T  19555354 ttcagaaaaaggcgggaagaccaa 19555331  T

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Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 19410958 - 19411072
Alignment:
Q  102 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 201  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19410958 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19411057  T
Q  202 tgggaacaccaagca 216  Q
     ||||| ||||||||    
T  19411058 cgggaagaccaagca 19411072  T

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Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 19457977 - 19458091
Alignment:
Q  102 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 201  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19457977 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19458076  T
Q  202 tgggaacaccaagca 216  Q
     ||||| ||||||||    
T  19458077 cgggaagaccaagca 19458091  T

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Target: chr8; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 19523101 - 19522987
Alignment:
Q  102 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 201  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19523101 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19523002  T
Q  202 tgggaacaccaagca 216  Q
     ||||| ||||||||    
T  19523001 cgggaagaccaagca 19522987  T

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Target: chr8; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 19404923 - 19405028
Alignment:
Q  90 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 189  Q
    ||||| ||||||||||||||||| |||||||||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  19404923 ggagatattggaaatgcagatatgtgttatggatataatagggacggagggtgccaaaagtgggaggatataccaacttgtagggaacctggtgaggtgt 19405022  T
Q  190 ttcaga 195  Q
    ||||||    
T  19405023 ttcaga 19405028  T

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Target: chr8; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 19376801 - 19376898
Alignment:
Q  96 attggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttca 193  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  19376801 attggaaatgcagatatatgttatggatataatagtgatcgagggtgccaaaaatgggaggatataccagcttgcagggaacctggtgaggtgtttca 19376898  T

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Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 19592308 - 19592416
Alignment:
Q  102 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 201  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19592308 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtttttcagaaaaagg 19592404  T
Q  202 tgggaacaccaa 213  Q
     |||||||||||    
T  19592405 cgggaacaccaa 19592416  T

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Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 19469466 - 19469355
Alignment:
Q  102 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 201  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19469466 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgtttcagaaaaagg 19469370  T
Q  202 tgggaacaccaagca 216  Q
     ||||| ||||||||    
T  19469369 cgggaagaccaagca 19469355  T

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Target: chr8; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 19540390 - 19540279
Alignment:
Q  102 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 201  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19540390 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgtttcagaaaaagg 19540294  T
Q  202 tgggaacaccaagca 216  Q
     ||||| ||||||||    
T  19540293 cgggaagaccaagca 19540279  T

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Target: chr8; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 19390685 - 19390864
Alignment:
Q  11 agttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagtggtgatga---agacaatgctagtggagaaattggaaatgca 107  Q
    ||||||||||||||||||||||||||||    |  |||||||||| | ||||| ||||| ||||||   ||| | |  ||||| ||| ||||  ||||||    
T  19390685 agttaaagatgggaagtttatacgatggttcattacctcgaaggggaggttaataagtgctgatgagggagagatttatagtgcagacattgctaatgca 19390784  T
Q  108 gatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 187  Q
    ||||  |||||||||||||||||  |||  |||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  19390785 gataagtgttatggatataatagtgatgccgggtgccaaaaatgggaggatataccaacttgcagggaccctcgtgaggt 19390864  T

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Target: chr8; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 19172742 - 19172660
Alignment:
Q  105 gcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 187  Q
    |||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  19172742 gcagatatgtgttatggctataataccgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 19172660  T

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Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 19287901 - 19287999
Alignment:
Q  102 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 200  Q
    ||||||||||  ||||||||||||||||   ||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||| ||||||    
T  19287901 aatgcagataagtgttatggatataataatgatgaagggtgccaaaaatgggaggatatgccaacttgcagggaacgtggtgaggtctttcaaaaaaag 19287999  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 19371145 - 19371192
Alignment:
Q  124 ataatagcaatggagggtgccaaaaatgggaggatataccaacttgta 171  Q
    ||||||| ||||| || ||||||||||||||| |||||||||||||||    
T  19371145 ataatagtaatggtggatgccaaaaatgggagtatataccaacttgta 19371192  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 19410882 - 19410933
Alignment:
Q  11 agttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagtta 62  Q
    |||||||||||||||||||  || |||||| |||||||||||||| ||||||    
T  19410882 agttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagtta 19410933  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 19457901 - 19457952
Alignment:
Q  11 agttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagtta 62  Q
    |||||||||||||||||||  || |||||| |||||||||||||| ||||||    
T  19457901 agttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagtta 19457952  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 19523177 - 19523126
Alignment:
Q  11 agttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagtta 62  Q
    |||||||||||||||||||  || |||||| |||||||||||||| ||||||    
T  19523177 agttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagtta 19523126  T

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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 19543241 - 19543337
Alignment:
Q  90 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgagg 186  Q
    ||||| ||||||||||||||  | |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19543241 ggagatattggaaatgcagacttgtgttatggatataatatcaacggagggtgccaaaaatgggaggatataccaagttgtagggaacctggtgagg 19543337  T

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