View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_222 (Length: 265)
Name: NF6864A_low_222
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_222 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 44228136 - 44228282
Alignment:
| Q |
9 |
gagatgaaggctttgtgggaagaattgcattctcataggccccttccaaattgtcattgtccttttcaatgcaagtgtgatgctgtgacagtaccaaaat |
108 |
Q |
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| T |
44228136 |
gagatgaaggctttgtgggaagaattgcattctcataggccccttccaaattgtcattgtccttttcaatgcaagtgtgatgctgtgacagtaccaaaat |
44228235 |
T |
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| Q |
109 |
cctatagagttgaagattagattatccaatttcttactggtcttaat |
155 |
Q |
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| T |
44228236 |
cctatagagttgaagatcagattatccaatttcttactggtcttaat |
44228282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 44231753 - 44231859
Alignment:
| Q |
159 |
atattgatgaccaaaattattgcttcaacatttctgagctttaaaatgcaaaaatatttcgtagtttcatcactcaaacttgtgctcattcaaaactacg |
258 |
Q |
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| T |
44231753 |
atattgacgaccaaaattattgcttcaacatttctgagctttaaaatgcaaaaatatttcgtagtttcatcactcaaacttgtgctcattcaaaactacg |
44231852 |
T |
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| Q |
259 |
aaatgtt |
265 |
Q |
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| T |
44231853 |
aaatgtt |
44231859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 44669212 - 44669066
Alignment:
| Q |
9 |
gagatgaaggctttgtgggaagaattgcattctcataggccccttccaaattgtcattgtccttttcaatgcaagtgtgatgctgtgacagtaccaaaat |
108 |
Q |
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| T |
44669212 |
gagatgaaggcgttatgggaagaattgcattcacataggccacttcctaactgcaattgtccatttcagtgtaaatgtgatgttattaaagtacctaaat |
44669113 |
T |
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| Q |
109 |
cctatagagttgaagattagattatccaatttcttactggtcttaat |
155 |
Q |
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| T |
44669112 |
cctatagaattgaagaccaaatcattcaatttcttactggtcttaat |
44669066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 34437807 - 34437755
Alignment:
| Q |
203 |
aatgcaaaaatatttcgtagtttcatcactcaaacttgtgctcattcaaaact |
255 |
Q |
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| T |
34437807 |
aatgcaaaaatatttcatagtatcatcactcaaacttgtgcttattcataact |
34437755 |
T |
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