View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_224 (Length: 264)
Name: NF6864A_low_224
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_224 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 28608957 - 28609207
Alignment:
| Q |
1 |
atcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttggtaaagctgcaatagtgga |
100 |
Q |
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| T |
28608957 |
atcgcgaagcattatctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcctgtttggtaaagctgcaatagtgga |
28609056 |
T |
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| Q |
101 |
caccacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattg |
200 |
Q |
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| T |
28609057 |
caccacaagtcatgataaagcaaggggcatattatctattgtaatggatagtgagaagcaaaaggaattagatgatgagtatgttaatggatttagattg |
28609156 |
T |
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| Q |
201 |
acaacgatgaacagcaatgattctatatcttattcagaagttgatgtccat |
251 |
Q |
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| T |
28609157 |
acaacgatgaacaacaatgattctatatcttattcagaagttgatgtccat |
28609207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 437947 - 437697
Alignment:
| Q |
1 |
atcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttggtaaagctgcaatagtgga |
100 |
Q |
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| T |
437947 |
atcgcgaagccttagctgttgcatggagaatggcaggacgcataggaacccaattatcagtggttcggatgctcctgtttgataatgctgaaatagtaga |
437848 |
T |
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| Q |
101 |
caccacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattg |
200 |
Q |
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| T |
437847 |
cacctcaagtcatgctgaaccacaagggatactatctattgtaatggatagtgagaagcagaaggagttagatgatgagtatgtgaatggatttagattg |
437748 |
T |
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| Q |
201 |
acaacgatgaacagcaatgattctatatcttattcagaagttgatgtccat |
251 |
Q |
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| T |
437747 |
acagcgatgaacaacaatgattctatatcttattcagaagttaatgtccat |
437697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 251
Target Start/End: Original strand, 13660453 - 13660578
Alignment:
| Q |
126 |
ggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattcta |
225 |
Q |
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| T |
13660453 |
ggcatattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattcta |
13660552 |
T |
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| Q |
226 |
tatcttattcagaagttgatgtccat |
251 |
Q |
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| T |
13660553 |
tatcatattcggaggttgatgtccat |
13660578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 13652957 - 13653078
Alignment:
| Q |
130 |
tattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatc |
229 |
Q |
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| T |
13652957 |
tattatctgttgtaatggataatgagaagcagaaggatctagacgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattttatatc |
13653056 |
T |
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| Q |
230 |
ttattcagaagttgatgtccat |
251 |
Q |
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| T |
13653057 |
ctattcagaggttgatgtccat |
13653078 |
T |
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