View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_225 (Length: 263)
Name: NF6864A_low_225
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_225 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 51 - 263
Target Start/End: Complemental strand, 30810542 - 30810326
Alignment:
| Q |
51 |
catgtgttcatggatatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataagt |
150 |
Q |
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| T |
30810542 |
catgtgttcatggatatagccgcgagccattgttgtgtcaatattatattataatcatttgttaaaagaaggactaatcaatattgaagatagaataagt |
30810443 |
T |
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| Q |
151 |
aaataaatgttga--agagtttttatagtgtaaaagaaatttgaaggtaactatgtatt--tatataatatagtagatgaagaggggtagacatacacat |
246 |
Q |
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| T |
30810442 |
aaataaatgttgaatagagtttttatagtgtaaaagaaatttgaaggtaactttgtatttatatataatatagtagatgaagagaggtagacatacacat |
30810343 |
T |
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| Q |
247 |
ttaatgtgaggggagat |
263 |
Q |
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| T |
30810342 |
ttaatgtgaggggagat |
30810326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 30815028 - 30814920
Alignment:
| Q |
38 |
tattaggatatatcatgtgttcatggatatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattga |
137 |
Q |
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| T |
30815028 |
tattagcatatatcatgtattcata-atctagtcgtgagtcattgttgtgtcaatattatattataatcatttgttaaaagaa-gaccaatcaatattga |
30814931 |
T |
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| Q |
138 |
agatagaataa |
148 |
Q |
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| T |
30814930 |
aaataaaataa |
30814920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 30820209 - 30820124
Alignment:
| Q |
64 |
atatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataag |
149 |
Q |
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| T |
30820209 |
atatagccgtgagtcactgttgtgccaatattatattatagtcatttgttaaaagaaggaccaatcaatattgaagttcgaataag |
30820124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 30811365 - 30811333
Alignment:
| Q |
18 |
aacctgtggccatcaaactttattaggatatat |
50 |
Q |
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| T |
30811365 |
aacctgtggccatcaaactttattaggatatat |
30811333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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