View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_239 (Length: 257)
Name: NF6864A_low_239
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_239 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 56168805 - 56169055
Alignment:
| Q |
1 |
tggcaaggcatgaagcttccaaattcaagccaggatctattcctgacagaccacctaggcgaaatgacactgttgttgcccattagagaactttcttttg |
100 |
Q |
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| T |
56168805 |
tggcaaggcatgaagcttccaaattcaagccaggatctattcctgacagaccacctaggcgaaatgacactgtttttgcccattaaagaactttcttttg |
56168904 |
T |
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| Q |
101 |
atgtttaaaggcatatatgcgtattgcaggtaataatatcaatgaacattttgctactgatgcttaggagcctaatatgtgcggttatatataggatcgt |
200 |
Q |
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| T |
56168905 |
aggtttaaaggcatatatgcgtattgcaggtaataatatcaatgaacattttactagtgatgcttaggagcctaatatgtgcggttatatataggatcgt |
56169004 |
T |
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| Q |
201 |
gtataaagttcaattaaggcattccttttgtcctgatatcattgtcattgc |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56169005 |
gtataaagttcaattaaggcattccttttgtcctgatatcattgtcattgc |
56169055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 706905 - 706659
Alignment:
| Q |
1 |
tggcaaggcatgaagcttccaaattcaagccaggatctattcctgacagaccacctaggcgaaatgacactgttgttgcccattagagaactttcttttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||| | |
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| T |
706905 |
tggcaaggcatgaagcttccaaattcaagccaggatctattcccgacagaccacctaggcgaaacgacactgtttttacccattagagaactttctt--g |
706808 |
T |
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| Q |
101 |
atgtttaaaggcatatatgcgtattgcaggtaataatatcaatgaacattttgctactgatgcttaggagcctaatatgtgcggttatatataggatcgt |
200 |
Q |
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| |||||||||||||||||| |||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||||||||| | |
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| T |
706807 |
aggtttaaaggcatatatgcatattgcaggtaa--atatcaatgaatattttgcaagtgatgcttaggagcctaatatgtgcgattatatataggatctt |
706710 |
T |
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| Q |
201 |
gtataaagttcaattaaggcattccttttgtcctgatatcattgtcattgc |
251 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
706709 |
gtatgaaattcaattaaggcattccttttgtcctgatatcattgccattgc |
706659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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