View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_250 (Length: 254)
Name: NF6864A_low_250
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_250 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 201
Target Start/End: Original strand, 38447101 - 38447296
Alignment:
| Q |
6 |
gtatcacagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaag |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447101 |
gtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaag |
38447200 |
T |
|
| Q |
106 |
aagaagaaaataaggtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgaggtatttttgttcatgttttactttc |
201 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447201 |
aagaagaaaataaagtctttcagttacgtaagaagtttggtggattcaaatggtctaaaatcgctcgcgaggtatttttgttcatgttttactttc |
38447296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 26033586 - 26033464
Alignment:
| Q |
41 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaggtctttcagttacgtaagaag |
140 |
Q |
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|||||| ||| | |||||||||||| |||| ||| | ||| |||||||||||||||||| |||||||||||| || || ||| ||| ||| ||| |
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| T |
26033586 |
aagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaag |
26033487 |
T |
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| Q |
141 |
tatggtggattcaaatggtctaa |
163 |
Q |
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||||||| ||||||||||||||| |
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| T |
26033486 |
tatggtgaattcaaatggtctaa |
26033464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 38180670 - 38180792
Alignment:
| Q |
41 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaggtctttcagttacgtaagaag |
140 |
Q |
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|||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| || ||| || ||| |||| || ||| |
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| T |
38180670 |
aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag |
38180769 |
T |
|
| Q |
141 |
tatggtggattcaaatggtctaa |
163 |
Q |
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||||||| ||||||||||||||| |
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| T |
38180770 |
tatggtgaattcaaatggtctaa |
38180792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 38190461 - 38190339
Alignment:
| Q |
41 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaggtctttcagttacgtaagaag |
140 |
Q |
| |
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|||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| || ||| || ||| |||| || ||| |
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| T |
38190461 |
aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag |
38190362 |
T |
|
| Q |
141 |
tatggtggattcaaatggtctaa |
163 |
Q |
| |
|
||||||| ||||||||||||||| |
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|
| T |
38190361 |
tatggtgaattcaaatggtctaa |
38190339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 38207894 - 38208016
Alignment:
| Q |
41 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaggtctttcagttacgtaagaag |
140 |
Q |
| |
|
|||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| || ||| || ||| |||| || ||| |
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| T |
38207894 |
aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag |
38207993 |
T |
|
| Q |
141 |
tatggtggattcaaatggtctaa |
163 |
Q |
| |
|
||||||| ||||||||||||||| |
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|
| T |
38207994 |
tatggtgaattcaaatggtctaa |
38208016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 38217686 - 38217564
Alignment:
| Q |
41 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaggtctttcagttacgtaagaag |
140 |
Q |
| |
|
|||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| || ||| || ||| |||| || ||| |
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| T |
38217686 |
aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag |
38217587 |
T |
|
| Q |
141 |
tatggtggattcaaatggtctaa |
163 |
Q |
| |
|
||||||| ||||||||||||||| |
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|
| T |
38217586 |
tatggtgaattcaaatggtctaa |
38217564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 38456030 - 38456152
Alignment:
| Q |
41 |
aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaggtctttcagttacgtaagaag |
140 |
Q |
| |
|
|||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| || ||| || ||| |||| || ||| |
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| T |
38456030 |
aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag |
38456129 |
T |
|
| Q |
141 |
tatggtggattcaaatggtctaa |
163 |
Q |
| |
|
||||||| ||||||||||||||| |
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|
| T |
38456130 |
tatggtgaattcaaatggtctaa |
38456152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 38342398 - 38342593
Alignment:
| Q |
6 |
gtatcacagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaag |
105 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||| | ||| ||||||||||||||| |||| |
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| T |
38342398 |
gtatcaaagaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaag |
38342497 |
T |
|
| Q |
106 |
aagaagaaaataaggtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttttgttcatgttttactt |
199 |
Q |
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|||||||| | || ||||| ||||| | |||| ||||| |||||||||||||| || |||| ||||| |||||||||||||| ||||||| |
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| T |
38342498 |
aagaagaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttttgttcatgctttactt |
38342593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 38446591 - 38446786
Alignment:
| Q |
6 |
gtatcacagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaag |
105 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||| | ||| ||||||||||||||| |||| |
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|
| T |
38446591 |
gtatcaaagaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaag |
38446690 |
T |
|
| Q |
106 |
aagaagaaaataaggtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttttgttcatgttttactt |
199 |
Q |
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|||||||| | || ||||| ||||| | |||| ||||| |||||||||||||| || |||| ||||| |||||||||||||| ||||||| |
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| T |
38446691 |
aagaagaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttttgttcatgctttactt |
38446786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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