View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_253 (Length: 254)
Name: NF6864A_low_253
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_253 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 9215429 - 9215544
Alignment:
| Q |
1 |
agatttggaatgacctttgtagattacaagaacggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaagaaactaaac |
100 |
Q |
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| T |
9215429 |
agatttggaatgacatttgtggattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaagaaactaaac |
9215528 |
T |
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| Q |
101 |
ttatgtttcttgtgag |
116 |
Q |
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| T |
9215529 |
ttatgtttcttgtgag |
9215544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 9215614 - 9215677
Alignment:
| Q |
186 |
gttctaaagaggtcctattcaaccgaaaagggagtgaaacatggatgtgtagatatactgatct |
249 |
Q |
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| T |
9215614 |
gttctaaagaggtcctattcaaccaaaaagggaatgaaacatggatgtgtagatatactgatct |
9215677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 25158921 - 25158812
Alignment:
| Q |
1 |
agatttggaatgacctttgtagattacaagaacggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaagaaactaaac |
100 |
Q |
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| T |
25158921 |
agatttggaatgacctttgttgattataagaatggcttgaaaagataccagaagttgtctgcattgtggtttaagaattttctcaaaaaagaaactaagc |
25158822 |
T |
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| Q |
101 |
ttatgtttct |
110 |
Q |
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| T |
25158821 |
ttatgtttct |
25158812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 25253924 - 25254006
Alignment:
| Q |
1 |
agatttggaatgacctttgtagattacaagaacggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttct |
83 |
Q |
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| T |
25253924 |
agatttggaatgacctttgtagattacaaaaatggtttgaaaagatatcaaaagctctcagggttgtggttcaagaattttct |
25254006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 25179085 - 25179001
Alignment:
| Q |
1 |
agatttggaatgacctttgtagattacaagaacggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctca |
85 |
Q |
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| T |
25179085 |
agatttggaatgacttttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttctca |
25179001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 25167383 - 25167300
Alignment:
| Q |
1 |
agatttggaatgacctttgtagattacaagaacggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctc |
84 |
Q |
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|||||||||||||| || ||||||||||| || |||||||||||||| | || || || | |||||||||| ||||||||||| |
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| T |
25167383 |
agatttggaatgacattcgtagattacaaaaatggtttgaaaagatatcaaaagctctcgggattgtggttccagaattttctc |
25167300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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