View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_254 (Length: 252)
Name: NF6864A_low_254
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_254 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 1738940 - 1739165
Alignment:
| Q |
9 |
agcaaagaataaaaagnnnnnnngggacacttgttgtaccagtttcgaacactgagatacctaattccaaaggtatctgtgcttcaaagttcataagaga |
108 |
Q |
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| T |
1738940 |
agcaaagaataaaaagtttttttgggacacttgttgtaccagtgtcgaacaccgacatacctaatcccaaaggtatctgtgcttcaaagttcataagtga |
1739039 |
T |
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| Q |
109 |
agtatacgacctttataaaaatctgatcagcagttaaaagcatggaagaaaattttgactggttaatagcattccaaatagtcgtatgaatgttgaagca |
208 |
Q |
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|||||| || |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1739040 |
agtatatgaactttttaaaaatctggtcagcagttaaaaacatggaagaaaattttgactggttaatagcattccaaatagtcgtatgaatgttgaagta |
1739139 |
T |
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| Q |
209 |
aagaaatttttaatccctgtaaatat |
234 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1739140 |
aagaaatttttaatccctgtaaatat |
1739165 |
T |
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