View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_26 (Length: 431)

Name: NF6864A_low_26
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_26
NF6864A_low_26
[»] chr3 (14 HSPs)
chr3 (1-425)||(5484450-5484872)
chr3 (1-243)||(5525676-5525916)
chr3 (1-183)||(5828161-5828344)
chr3 (1-185)||(5502897-5503079)
chr3 (1-185)||(5490083-5490266)
chr3 (1-183)||(5454907-5455089)
chr3 (1-181)||(20343528-20343709)
chr3 (14-185)||(5446346-5446517)
chr3 (14-161)||(5854204-5854351)
chr3 (1-114)||(5848890-5849003)
chr3 (2-115)||(5802494-5802607)
chr3 (237-301)||(5525588-5525652)
chr3 (363-423)||(5525497-5525557)
chr3 (357-425)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (14-185)||(25809295-25809466)


Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 5484872 - 5484450
Alignment:
Q  1 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||||| ||||||||||||||||||||||||    
T  5484872 agatggtgggagtggctgcttactttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggcatcttca 5484773  T
Q  101 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactggcact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||| |||    
T  5484772 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtgtgatag--ctggtact 5484675  T
Q  201 gataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484674 gataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaaca 5484575  T
Q  301 taaaattacgcggcattaataattctcttttcacttttccctatagatcttttttccttctttatctgcttcttgactgacatttacttcaaactacaga 400  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  5484574 taaaattacgtggcattaataattctcttttcacttttccctgtagatcttttttccttctttatctgcttcttgaatgacatttacttcaacctacaga 5484475  T
Q  401 tcatataaagaatacgagaaacttg 425  Q
    |||||||||||||||||||||||||    
T  5484474 tcatataaagaatacgagaaacttg 5484450  T

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Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5525916 - 5525676
Alignment:
Q  1 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 100  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   |||||||||||||||||||||  |||||||||||    
T  5525916 agatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatcttca 5525817  T
Q  101 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactggcact 200  Q
    |||||||||||||| | |||| |  |||||||||  || |||||| |||||||| ||||  |||||| ||||||||||||||||||||||||||||||||    
T  5525816 gaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagcac--atttatatatttcatcatttgtgtgatagaactggcact 5525719  T
Q  201 gataccttaactgtttaattaataggaaaagattacaaaacat 243  Q
    | ||||||||| |||||||||||||||| ||||||||||||||    
T  5525718 gctaccttaacagtttaattaataggaatagattacaaaacat 5525676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 5828161 - 5828344
Alignment:
Q  1 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 100  Q
    |||||||||||| ||||||||||||||||||  ||| ||||||||||||||||| ||||||||   ||||||||||||||||||||| || ||||||||     
T  5828161 agatggtgggagtggctgcttactttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgcatcttcc 5828260  T
Q  101 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttat-ttcatcatttgt 183  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||  || | |||||||||| ||| |||| |||||||    
T  5828261 gaacttggtattttcatttccaaagacatattttacctcttcagttagatgcataggacaaatttatatatattcagcatttgt 5828344  T

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Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 5503079 - 5502897
Alignment:
Q  1 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 100  Q
    |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  5503079 agatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggcatcttca 5502980  T
Q  101 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 185  Q
    || |||||||||||||||| | |  ||||||||| ||  |||||| |||||||  ||| |||||||  ||||||| |||||||||    
T  5502979 gagcttggtattttcatttgctattacatattttgtcctttcagttagatata--gcataaatttacatatttcaccatttgtgt 5502897  T

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Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 5490266 - 5490083
Alignment:
Q  1 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 100  Q
    |||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| |||||||||||    
T  5490266 agatggtgggagtggctgcatactttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttca 5490167  T
Q  101 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 185  Q
    ||||||||||||||||||||  |  ||||||||| ||| |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5490166 gaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgt 5490083  T

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Target: chr3; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 5455089 - 5454907
Alignment:
Q  1 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 100  Q
    ||||| |||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| |||||||||||    
T  5455089 agatgatgggagtggctgcatactttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttca 5454990  T
Q  101 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgt 183  Q
    ||||||||||||||| ||||  |  ||||||||| ||| |||||| |||||||| ||| ||| |||| ||||||| |||||||    
T  5454989 gaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgt 5454907  T

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Target: chr3; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 20343709 - 20343528
Alignment:
Q  1 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 100  Q
    |||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||  || ||||||||||||||||| |||||||| |||||||||    
T  20343709 agatggtgggagtggttgcttactttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagcatcttca 20343610  T
Q  101 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaattt-atttatttcatcattt 181  Q
    ||||||||||||||||||||| |  |||| ||||  || | |||| ||||||||||||||||||| || ||||||| |||||    
T  20343609 gaacttggtattttcatttcctattacatctttttcctttccagttagatatattgcacaaatttcatatatttcagcattt 20343528  T

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Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 5446517 - 5446346
Alignment:
Q  14 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 113  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5446517 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 5446418  T
Q  114 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 185  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5446417 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 5446346  T

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Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 5854204 - 5854351
Alignment:
Q  14 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 113  Q
    ||||||||||||||||||| ||||||||| || |||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5854204 ggctgcttactttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggcatcttcagaacttggtattt 5854303  T
Q  114 tcatttccaaagacatattttatctcttcagtcagatatattgcacaa 161  Q
     ||||||| |  |||| ||||  || ||||||| ||||||| ||||||    
T  5854304 acatttcctattacatcttttgccttttcagtctgatatatagcacaa 5854351  T

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Target: chr3; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 5848890 - 5849003
Alignment:
Q  1 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 100  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   ||||||||||||||||||||| || |||||||||    
T  5848890 agatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgcatcttca 5848989  T
Q  101 gaacttggtatttt 114  Q
    ||||| ||||||||    
T  5848990 gaactcggtatttt 5849003  T

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Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 5802494 - 5802607
Alignment:
Q  2 gatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcag 101  Q
    |||||||| || ||||||||||||||||||  ||| ||| ||||||||||||| ||||| ||   ||||||||||||||||||||| || ||||||||||    
T  5802494 gatggtggtagtggctgcttactttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcatcttcag 5802593  T
Q  102 aacttggtattttc 115  Q
    ||||||||||||||    
T  5802594 aacttggtattttc 5802607  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 5525652 - 5525588
Alignment:
Q  237 aaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat 301  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||  |||| ||| |||||||    
T  5525652 aaaacacataaatgccaacttctgaaaataatcaacctctaggaattgagtaccgttcaaaacat 5525588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 423
Target Start/End: Complemental strand, 5525557 - 5525497
Alignment:
Q  363 tatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaact 423  Q
    ||||||||| |||||||||||||||||||| |  ||||||||| |||||||| ||| ||||    
T  5525557 tatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaact 5525497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 425
Target Start/End: Complemental strand, 20343390 - 20343322
Alignment:
Q  357 cttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttg 425  Q
    ||||| || |||||| |||||||||||||| ||||| |  ||||||||| |||||||| ||| ||||||    
T  20343390 cttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttg 20343322  T

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Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 25809295 - 25809466
Alignment:
Q  14 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 113  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25809295 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 25809394  T
Q  114 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 185  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  25809395 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 25809466  T

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