View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_low_264 (Length: 251)
Name: NF6864A_low_264
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_264 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24370461 - 24370687
Alignment:
| Q |
1 |
gaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacagagtttatgcatctgtttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24370461 |
gaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaaattcatgtttactaaagtgacagagtttatgcatctgtttag |
24370560 |
T |
|
| Q |
101 |
gacattgttgtagcttaacccaagttaaactttcctttccatcaaataggttgagtgaagtaataaccttcacctttggttgtagatgaacttcattttg |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24370561 |
gacattgttgtagcttaaaccaagttaaactttcctttccatcaaataggttgagtgaagtaataaccttcacctttggttgtagctgaacttcattttg |
24370660 |
T |
|
| Q |
201 |
aaatattatgaaggaaatgtctatggt |
227 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
24370661 |
aaatattttgaaggaaatgtctatggt |
24370687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 24364082 - 24363972
Alignment:
| Q |
1 |
gaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacagagtttatgcatctgtttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
24364082 |
gaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgtttactaaagtgacagagtttatgcgtctgtttta |
24363983 |
T |
|
| Q |
101 |
gacattgttgt |
111 |
Q |
| |
|
|| |||||||| |
|
|
| T |
24363982 |
gagattgttgt |
24363972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 24352660 - 24352746
Alignment:
| Q |
12 |
atgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacagagtttatgcatctgttt |
98 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
24352660 |
atgtttgtgtctttgaactgataaacaaggaaaatttagtttttaaagttcatgttttctaaaggaacagagttgatgtatctgttt |
24352746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 24362901 - 24362979
Alignment:
| Q |
3 |
aatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacag |
81 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| ||||||| ||||||| ||||||||| |||||||||| ||||| ||||| |
|
|
| T |
24362901 |
aatcgggagatgtttgtgtctttgaactgacaaacaagcaagatttagtttttaaaattcatgttttataaagggacag |
24362979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 24346952 - 24347003
Alignment:
| Q |
6 |
caggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaa |
57 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
24346952 |
caggagatgtttgtgtctttgaactgataaacaagaaggatttggtttttaa |
24347003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 24356060 - 24356127
Alignment:
| Q |
7 |
aggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaa |
74 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
24356060 |
aggaaatgtttgtgtcttcgaactgataaacaaggaaggtttagtttttaaagttcatgttttctaaa |
24356127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 24359390 - 24359454
Alignment:
| Q |
8 |
ggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttcta |
72 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
24359390 |
ggagatgtttgtgtctttgagctcataaacaaggaagatttagtttttaaagttcatattttcta |
24359454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 24314062 - 24314129
Alignment:
| Q |
14 |
gtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacag |
81 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||| |||||| || | |||||||||| |
|
|
| T |
24314062 |
gtttgtgtctttgaactgataaacaagaaggatttggtttttaatgttcatattaccaaaagtgacag |
24314129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University