View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6864A_low_267 (Length: 250)
Name: NF6864A_low_267
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_267 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 45123582 - 45123339
Alignment:
| Q |
7 |
ctgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattctgtaatagacattcatagaaggatacatttgagaaac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45123582 |
ctgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattttgtaatagacattcatagaaggatatatttgagaaac |
45123483 |
T |
|
| Q |
107 |
atttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtggaaacttcaaaaagcggaga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45123482 |
atttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtagaaacttcaaaaagcggaga |
45123383 |
T |
|
| Q |
207 |
cgaaactatgatcattgtccaataacaactagaaaataatacta |
250 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45123382 |
cgaaactatgatcattgtccaatgacaactagaaaataatacta |
45123339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University