View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_27 (Length: 429)

Name: NF6864A_low_27
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_27
NF6864A_low_27
[»] chr7 (9 HSPs)
chr7 (20-425)||(36481646-36482051)
chr7 (56-141)||(32724350-32724435)
chr7 (20-135)||(36657818-36657933)
chr7 (34-92)||(4958335-4958393)
chr7 (36-141)||(23801755-23801860)
chr7 (34-71)||(38360778-38360815)
chr7 (34-143)||(46747954-46748063)
chr7 (34-143)||(47841343-47841452)
chr7 (35-143)||(44441686-44441794)
[»] chr1 (15 HSPs)
chr1 (20-143)||(13984117-13984240)
chr1 (25-141)||(38902048-38902164)
chr1 (35-143)||(43822870-43822978)
chr1 (38-143)||(25813833-25813938)
chr1 (20-141)||(23333839-23333964)
chr1 (23-109)||(47783609-47783695)
chr1 (20-115)||(32451708-32451803)
chr1 (20-143)||(11120631-11120760)
chr1 (20-141)||(27544451-27544572)
chr1 (34-141)||(43506352-43506460)
chr1 (30-73)||(7789800-7789843)
chr1 (26-73)||(19415375-19415422)
chr1 (31-73)||(24555824-24555866)
chr1 (44-106)||(43675153-43675215)
chr1 (38-143)||(52353710-52353815)
[»] chr2 (6 HSPs)
chr2 (20-146)||(9583221-9583347)
chr2 (30-140)||(6710796-6710906)
chr2 (35-141)||(14772849-14772955)
chr2 (20-143)||(26312550-26312673)
chr2 (34-121)||(37347780-37347867)
chr2 (35-141)||(11922038-11922144)
[»] chr8 (12 HSPs)
chr8 (34-143)||(13628958-13629067)
chr8 (34-143)||(13729370-13729479)
chr8 (20-143)||(1155058-1155181)
chr8 (43-143)||(37673678-37673778)
chr8 (31-141)||(9135092-9135201)
chr8 (30-146)||(31226388-31226504)
chr8 (30-133)||(5535725-5535828)
chr8 (22-93)||(3628309-3628380)
chr8 (26-73)||(31128548-31128595)
chr8 (34-141)||(35468426-35468531)
chr8 (35-73)||(35893475-35893513)
chr8 (33-65)||(16531569-16531601)
[»] chr4 (18 HSPs)
chr4 (22-143)||(2396380-2396501)
chr4 (20-143)||(45833928-45834050)
chr4 (33-143)||(26699099-26699209)
chr4 (38-139)||(49211125-49211227)
chr4 (20-138)||(52199882-52200000)
chr4 (35-144)||(10180534-10180643)
chr4 (30-87)||(23359191-23359248)
chr4 (20-144)||(822301-822424)
chr4 (20-143)||(35331905-35332028)
chr4 (19-126)||(35382303-35382409)
chr4 (34-92)||(44500587-44500645)
chr4 (78-139)||(8892340-8892401)
chr4 (20-141)||(35144467-35144588)
chr4 (20-73)||(39629185-39629238)
chr4 (98-145)||(30615683-30615730)
chr4 (23-65)||(41915987-41916029)
chr4 (20-73)||(38864972-38865025)
chr4 (35-71)||(53455082-53455118)
[»] chr5 (3 HSPs)
chr5 (34-141)||(41520785-41520892)
chr5 (55-140)||(7293160-7293245)
chr5 (30-94)||(1309733-1309797)
[»] chr3 (6 HSPs)
chr3 (26-117)||(13755100-13755191)
chr3 (26-117)||(13768501-13768592)
chr3 (51-139)||(55222601-55222689)
chr3 (20-141)||(46006002-46006122)
chr3 (30-140)||(29950707-29950820)
chr3 (30-140)||(29999861-29999974)
[»] scaffold0036 (1 HSPs)
scaffold0036 (26-119)||(63636-63729)
[»] chr6 (3 HSPs)
chr6 (20-139)||(32977297-32977417)
chr6 (34-73)||(31743552-31743591)
chr6 (30-141)||(32658349-32658460)


Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 36482051 - 36481646
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||| |||||||||||||||||||||||||    
T  36482051 atctgggttagagtgattgagtgcttattaaatactactattaaaatattacaagtgagtgatatgtacacgtgaaacctatttaagaactcaaaaatag 36481952  T
Q  120 atgtctctattgtggatgctctaaagacgctattcagctggaccctgtaaacatttcaatcctttctactcaaaaagtacatctagcatatctcaatgtc 219  Q
     |||||| |||| ||| ||||||||||  |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36481951 gtgtctccattgcggaagctctaaagaaactattcagcaagaccctgtaaacatttcaatcctttctactcaaaaagtacatctagcatacctcaatgtc 36481852  T
Q  220 attattttctcaatgccattaatgatatgctaagttggaattttgaaatgtcattattccaatcaaattacatcatattcaaattacgcaaatttgttag 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36481851 attattttctcaatgccattaatgatatgctaagttggaattttgaaatgtcattattccaatcaaattacatcatattcaaattacgcaaatttgttag 36481752  T
Q  320 agtaatagagtaactgctttcaaagtcaatttataagagaatcggatttcaaatcacataatatctttagcattcatttatcatcatagcaataaacaaa 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  36481751 agtaatagagtaactgctttcaaagtcaatttataagagaatcggatttcaaatcacataatatctttcgcattcatttatcatcataacaataaacaaa 36481652  T
Q  420 cttgat 425  Q
    ||||||    
T  36481651 cttgat 36481646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 32724350 - 32724435
Alignment:
Q  56 actattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtggatgctct 141  Q
    |||||||||| ||||||| || |||||||||||| | || ||| ||||||| || ||||||||| |||||| ||||||||||||||    
T  32724350 actattaaaaaattataaatgaatgatatgtacatgcgggaccaatttaagtacccaaaaataggtgtctccattgtggatgctct 32724435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 36657933 - 36657818
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||| ||| |||||||||||||||||||| ||| ||||||||||| ||||||| ||    || ||||||| ||  ||| |||||||||| ||||||| |    
T  36657933 atctgggttggagtgattgagtgcttattagatagtactattaaaaaattataaatgagcaatgtgtacacatgagacccatttaagaacccaaaaatgg 36657834  T
Q  120 atgtctctattgtgga 135  Q
     |||||| ||||||||    
T  36657833 gtgtctccattgtgga 36657818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 4958335 - 4958393
Alignment:
Q  34 gattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgt 92  Q
    ||||||||| |||||| ||||||||||||||| ||||||| || ||||| |||||||||    
T  4958335 gattgagtgtttattagatactactattaaaaaattataaatgaatgatgtgtacacgt 4958393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 23801860 - 23801755
Alignment:
Q  36 ttgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtgga 135  Q
    |||||| |||||||  ||||| |||||||| |||| ||  || |||||||||||||||||||  ||||||| ||  ||||||   |||||| |||||| |    
T  23801860 ttgagtacttattaggtactattattaaaaaattaaaaacgggtgatatgtacacgtggaactcatttaagtaccaaaaaatgagtgtctccattgtgaa 23801761  T
Q  136 tgctct 141  Q
    ||||||    
T  23801760 tgctct 23801755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 38360815 - 38360778
Alignment:
Q  34 gattgagtgcttattaaatactactattaaaatattat 71  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  38360815 gattgagtgcttattagatactactattaaaaaattat 38360778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 46748063 - 46747954
Alignment:
Q  34 gattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtg 133  Q
    |||||||| |||||||  | |||||||||||| ||||||| |   |||| |||| | |||| ||| |||||| ||| ||||||| ||||||||  || ||    
T  46748063 gattgagttcttattaggtgctactattaaaaaattataaataagtgatgtgtataagtgggacccatttaaaaacccaaaaatggatgtctcagttatg 46747964  T
Q  134 gatgctctaa 143  Q
    ||||||||||    
T  46747963 gatgctctaa 46747954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 47841452 - 47841343
Alignment:
Q  34 gattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtg 133  Q
    |||||||| |||||||||||||||||||| || ||||||| ||  | || |||||| |||| ||  ||||||| ||  |||||  || ||||| |||| |    
T  47841452 gattgagtacttattaaatactactattacaaaattataaatgagttatgtgtacatgtgggactcatttaagtacctaaaaaaggaggtctccattgcg 47841353  T
Q  134 gatgctctaa 143  Q
    ||||||||||    
T  47841352 gatgctctaa 47841343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 44441686 - 44441794
Alignment:
Q  35 attgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtgg 134  Q
    ||||||| |||||||  ||||||  |||||| ||||||| ||  |||| ||||||  ||  ||| |||||||||| || ||||| || |||| |||||||    
T  44441686 attgagttcttattaggtactaccgttaaaaaattataaatgagtgatgtgtacatttgagacccatttaagaacccagaaataaatatctccattgtgg 44441785  T
Q  135 atgctctaa 143  Q
    |||||||||    
T  44441786 atgctctaa 44441794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 13984117 - 13984240
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||| ||||||| |||||||| ||||||| ||||||||||||||| ||||||| ||  |||| ||||  ||||| ||| ||||||||||| |||||| |    
T  13984117 atctgggttagagagattgagtacttattagatactactattaaaaaattataaatgtgtgatgtgtatgcgtgggacccatttaagaacttaaaaatgg 13984216  T
Q  120 atgtctctattgtggatgctctaa 143  Q
    ||||||| ||||||||||||||||    
T  13984217 atgtctccattgtggatgctctaa 13984240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 38902048 - 38902164
Alignment:
Q  25 agttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtc 124  Q
    |||| ||||||| ||||||||||||  |||||||||||||| ||||||| ||  |||||||||||||||  ||| |||||||||| |||||||   ||||    
T  38902048 agtttgagtgatcgagtgcttattaggtactactattaaaaaattataaatgagtgatatgtacacgtgagacccatttaagaacccaaaaatgagtgtc 38902147  T
Q  125 tctattgtggatgctct 141  Q
    || ||||||| ||||||    
T  38902148 tccattgtgggtgctct 38902164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 43822870 - 43822978
Alignment:
Q  35 attgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtgg 134  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||  |||| ||||| ||||| ||| ||||||||||  |||||| | | |||| |||||||    
T  43822870 attgagtgcttattagatactactattaaaaaattataaatgagtgatgtgtacgcgtgggacccatttaagaaccaaaaaatgggtatctccattgtgg 43822969  T
Q  135 atgctctaa 143  Q
    |||||||||    
T  43822970 atgctctaa 43822978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 25813833 - 25813938
Alignment:
Q  38 gagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtggatg 137  Q
    |||| |||||||  |||| ||||||||| ||||||| ||  |||| ||||| ||||| |||||||||||||| ||||||| |||||||| ||| ||||||    
T  25813833 gagtacttattatgtacttctattaaaaaattataaatgagtgatgtgtacgcgtgggacctatttaagaacccaaaaatggatgtctccattatggatg 25813932  T
Q  138 ctctaa 143  Q
     |||||    
T  25813933 ttctaa 25813938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 23333839 - 23333964
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtg---gat-gatatgtacacgtggaacctatttaagaactcaaaa 115  Q
    ||||| ||| ||||||||||||||||||||| ||||| |||||||| ||||||| ||   ||| ||| |||| ||||   ||||||||||||||  ||||    
T  23333839 atctgggttggagtgattgagtgcttattaagtactattattaaaaaattataaatgagtgatcgatgtgtatacgtaagacctatttaagaacctaaaa 23333938  T
Q  116 atagatgtctctattgtggatgctct 141  Q
    ||||||||||  ||||||||| ||||    
T  23333939 atagatgtcttcattgtggattctct 23333964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 47783695 - 47783609
Alignment:
Q  23 tgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaac 109  Q
    |||||| ||||||||||||| ||||||||||||| |||||||| |||||||    ||||| ||||||||||  ||| ||||||||||    
T  47783695 tgagttggagtgattgagtgtttattaaatactattattaaaaaattataaacaaatgatgtgtacacgtgagacccatttaagaac 47783609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 32451803 - 32451708
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaa 115  Q
    ||||||||| |||||||||| |||||||||  || ||||||||||| ||||||| |   |||| |||| |||||  ||| ||||||||||||||||    
T  32451803 atctgagttggagtgattgaatgcttattaggtattactattaaaaaattataaattagtgatgtgtaaacgtgagacccatttaagaactcaaaa 32451708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 11120631 - 11120760
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||| ||| |||| |||||||| |||||| ||||||||||||||  ||||||| ||  |||| |||| |||||| | | |||||| ||| ||||||| |    
T  11120631 atctgcgttggagtaattgagtgtttattagatactactattaaagaattataaatgagtgatgtgtatacgtggtatccatttaaaaacccaaaaatgg 11120730  T
Q  120 ------atgtctctattgtggatgctctaa 143  Q
          ||||||||||||||||||||||||    
T  11120731 atgtctatgtctctattgtggatgctctaa 11120760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 27544451 - 27544572
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||| ||| ||| |||||||||||||||| || ||| |||||||| ||||||| ||  |||| ||||||| ||  ||| ||||||| ||  |||||| |    
T  27544451 atctgggttggagggattgagtgcttattagatgctattattaaaaaattataaatgagtgatgtgtacacatgagacccatttaagtaccaaaaaattg 27544550  T
Q  120 atgtctctattgtggatgctct 141  Q
      ||||| ||||||||||||||    
T  27544551 gcgtctccattgtggatgctct 27544572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 43506352 - 43506460
Alignment:
Q  34 gattgagtgcttattaaatactactattaaaata-ttataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgt 132  Q
    ||||||||||||| ||| ||||| |||||||| | |||||| || ||||| | ||||| || |||||||||||| ||  ||||||   |||||| |||||    
T  43506352 gattgagtgcttactaagtactaatattaaaaaaattataaatgaatgatgtctacacatgtaacctatttaagtaccaaaaaatgattgtctcaattgt 43506451  T
Q  133 ggatgctct 141  Q
    |||||||||    
T  43506452 ggatgctct 43506460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 7789800 - 7789843
Alignment:
Q  30 gagtgattgagtgcttattaaatactactattaaaatattataa 73  Q
    |||||||||||||| |||||||||||| |||||||| |||||||    
T  7789800 gagtgattgagtgcctattaaatactattattaaaaaattataa 7789843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 19415375 - 19415422
Alignment:
Q  26 gttagagtgattgagtgcttattaaatactactattaaaatattataa 73  Q
    ||||||| |||| | ||||||||||||||||||||||||| |||||||    
T  19415375 gttagagagatttaatgcttattaaatactactattaaaaaattataa 19415422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 24555866 - 24555824
Alignment:
Q  31 agtgattgagtgcttattaaatactactattaaaatattataa 73  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||    
T  24555866 agtgattgaatgcttattagatactactattaaaaaattataa 24555824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 43675215 - 43675153
Alignment:
Q  44 ttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaag 106  Q
    |||||||||||||| ||||||| ||||||| ||  |||| ||||||| || ||||||||||||    
T  43675215 ttattaaatactacaattaaaaaattataaatgagtgatgtgtacacatgaaacctatttaag 43675153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 52353815 - 52353710
Alignment:
Q  38 gagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtggatg 137  Q
    ||||||||||||  |||| ||||||||| ||||||| |   |||| ||||||||||| ||| ||||||| || | |||||   |||||  ||||||||||    
T  52353815 gagtgcttattaggtactgctattaaaaaattataaattagtgatgtgtacacgtgggacccatttaagtaccctaaaatgtgtgtcttcattgtggatg 52353716  T
Q  138 ctctaa 143  Q
    ||||||    
T  52353715 ctctaa 52353710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 9583221 - 9583347
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| |   ||||  |||||||||  ||  |||||||||| |||||||||    
T  9583221 atctgagtttgagtgattgagtgcttattagatactactattaaaaaattataaataagtgatgcgtacacgtgagactcatttaagaacccaaaaatag 9583320  T
Q  120 atgtctctattgtggatgctctaaaga 146  Q
      || || |||||||||||||||||||    
T  9583321 gcgtgtccattgtggatgctctaaaga 9583347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 6710906 - 6710796
Alignment:
Q  30 gagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctat 129  Q
    |||||| ||||||||||||| ||||||||||||||| ||||||| ||  |||| ||||||||||  ||| |||||| ||  ||||||| |||||||| ||    
T  6710906 gagtgactgagtgcttattagatactactattaaaaaattataaatgagtgatctgtacacgtgagacccatttaaaaatccaaaaatggatgtctccat 6710807  T
Q  130 tgtggatgctc 140  Q
    ||| |||||||    
T  6710806 tgtagatgctc 6710796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 14772955 - 14772849
Alignment:
Q  35 attgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtgg 134  Q
    ||||||| |||||||  ||||| | |||||| ||||||| || ||||| ||||| ||||  ||| |||||||||||||||||| | |||||| ||||| |    
T  14772955 attgagtacttattaggtactattgttaaaaaattataaatgaatgatgtgtacgcgtgagacccatttaagaactcaaaaatgggtgtctccattgtag 14772856  T
Q  135 atgctct 141  Q
    |||||||    
T  14772855 atgctct 14772849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 26312550 - 26312673
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||||||| |||  |||||||||||||||  |||||||||||||| ||||||| ||  |||| ||||||||||  |||  |||||| || ||||||  |    
T  26312550 atctgagttggaggaattgagtgcttattaggtactactattaaaaaattataaatgagtgatgtgtacacgtgtgacccgtttaagtacccaaaaaggg 26312649  T
Q  120 atgtctctattgtggatgctctaa 143  Q
     | |||| ||||||||| ||||||    
T  26312650 gtatctccattgtggatactctaa 26312673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 37347867 - 37347780
Alignment:
Q  34 gattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagat 121  Q
    |||||| | ||||||| ||| ||||||||||| ||||||| |  ||||| ||||||||||  | | |||||||||| |||||||||||    
T  37347867 gattgaattcttattagatattactattaaaaaattataaataaatgatgtgtacacgtgagatccatttaagaacccaaaaatagat 37347780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 11922038 - 11922144
Alignment:
Q  35 attgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtgg 134  Q
    ||||||||||| |||  |||||||||||||| ||||||| ||  | || ||||||||||  ||| ||||||| | | ||||||   |||||| |||||||    
T  11922038 attgagtgctttttaggtactactattaaaaaattataaatgagtaatgtgtacacgtgagacccatttaagtaattaaaaatgagtgtctccattgtgg 11922137  T
Q  135 atgctct 141  Q
    |||||||    
T  11922138 atgctct 11922144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 13629067 - 13628958
Alignment:
Q  34 gattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtg 133  Q
    |||||| | ||||||| ||||||||||||||| ||||||| || ||||| |||||| |||  ||| |||||||||||||||||| || ||||| ||||||    
T  13629067 gattgactacttattagatactactattaaaaaattataaatgaatgatgtgtacatgtgagacccatttaagaactcaaaaatggaggtctccattgtg 13628968  T
Q  134 gatgctctaa 143  Q
    ||||||||||    
T  13628967 gatgctctaa 13628958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 13729479 - 13729370
Alignment:
Q  34 gattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtg 133  Q
    |||||| | ||||||| ||||||||||||||| ||||||| || ||||| |||||| |||  ||| |||||||||||||||||| || ||||| ||||||    
T  13729479 gattgactacttattagatactactattaaaaaattataaatgaatgatgtgtacatgtgagacccatttaagaactcaaaaatggaggtctccattgtg 13729380  T
Q  134 gatgctctaa 143  Q
    ||||||||||    
T  13729379 gatgctctaa 13729370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 1155181 - 1155058
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||| ||| ||| |||||| ||||||||| ||||||||||||||| ||||||| ||  |||| |||||||| || | | ||||||||||  |||||| |    
T  1155181 atctgggttggagggattgaatgcttattagatactactattaaaaaattataaatgagtgatgtgtacacgcgggatccatttaagaaccaaaaaattg 1155082  T
Q  120 atgtctctattgtggatgctctaa 143  Q
     |||||| ||||||||||||||||    
T  1155081 ttgtctcgattgtggatgctctaa 1155058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 37673778 - 37673678
Alignment:
Q  43 cttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtggatgctcta 142  Q
    |||||||  |||||||||||||| ||||||| ||  |||| ||||| ||||  || ||||||||||| ||||||| |||||||| |||||||||||||||    
T  37673778 cttattaggtactactattaaaaaattataaatgagtgatgtgtacgcgtgacacatatttaagaacccaaaaatggatgtctccattgtggatgctcta 37673679  T
Q  143 a 143  Q
    |    
T  37673678 a 37673678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 9135092 - 9135201
Alignment:
Q  31 agtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctatt 130  Q
    |||||||||||||||||||  |||||||||||||| ||| ||| ||  |||||||||||||||  ||| |||||||||  |||||||   |||||| |||    
T  9135092 agtgattgagtgcttattaggtactactattaaaa-attgtaaatgagtgatatgtacacgtgagacccatttaagaatccaaaaatgagtgtctccatt 9135190  T
Q  131 gtggatgctct 141  Q
    ||| |||||||    
T  9135191 gtgaatgctct 9135201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 31226504 - 31226388
Alignment:
Q  30 gagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctat 129  Q
    ||||| ||||||  ||||||  |||||||||||||| ||||||| ||  |||| |||||| |||  ||| |||||||||| ||||||| | ||| || ||    
T  31226504 gagtgtttgagtatttattaggtactactattaaaaaattataaatgagtgatgtgtacatgtgacacccatttaagaacccaaaaatgggtgtttccat 31226405  T
Q  130 tgtggatgctctaaaga 146  Q
    |||||||||| ||||||    
T  31226404 tgtggatgctttaaaga 31226388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 5535828 - 5535725
Alignment:
Q  30 gagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctat 129  Q
    |||||||||||||||||| |  ||||| |||||||| ||||||| ||  |||| |||||||||||||   |||||| ||| |||||||  ||||||| ||    
T  5535828 gagtgattgagtgcttataaggtactaatattaaaaaattataaatgagtgatgtgtacacgtggaattcatttaaaaacccaaaaatgaatgtctccat 5535729  T
Q  130 tgtg 133  Q
    ||||    
T  5535728 tgtg 5535725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 3628309 - 3628380
Alignment:
Q  22 ctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtg 93  Q
    ||||||| |||  ||| ||||||||||||  ||||||||||||| ||||||| |  ||||||||||||||||    
T  3628309 ctgagttggaggaatttagtgcttattaagcactactattaaaaaattataaataaatgatatgtacacgtg 3628380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 31128595 - 31128548
Alignment:
Q  26 gttagagtgattgagtgcttattaaatactactattaaaatattataa 73  Q
    |||||||||||||| |||||||||  |||||||||||||| |||||||    
T  31128595 gttagagtgattgaatgcttattaggtactactattaaaaaattataa 31128548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 35468426 - 35468531
Alignment:
Q  34 gattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtg 133  Q
    |||||||| |||||||| |||| ||||||||| ||||||| ||  |||| ||||| ||||  ||| ||||||||||||||||  || |||||| ||||||    
T  35468426 gattgagtacttattaagtactgctattaaaa-attataaatgagtgatgtgtacgcgtgagacccatttaagaactcaaaacgag-tgtctccattgtg 35468523  T
Q  134 gatgctct 141  Q
    ||| ||||    
T  35468524 gatactct 35468531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 35893475 - 35893513
Alignment:
Q  35 attgagtgcttattaaatactactattaaaatattataa 73  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  35893475 attgactgcttattaaatactactattaaaaaattataa 35893513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 16531601 - 16531569
Alignment:
Q  33 tgattgagtgcttattaaatactactattaaaa 65  Q
    ||||||||||||||||||||| |||||||||||    
T  16531601 tgattgagtgcttattaaatattactattaaaa 16531569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 2396380 - 2396501
Alignment:
Q  22 ctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagat 121  Q
    ||||||| ||| |||||||| |||||||  |||||||||||| | ||||||| |   |||| ||||||||||| ||  |||||||||| ||||||| |||    
T  2396380 ctgagtttgagcgattgagttcttattaggtactactattaacaaattataaataagtgatgtgtacacgtgggactcatttaagaacccaaaaatggat 2396479  T
Q  122 gtctctattgtggatgctctaa 143  Q
    |||||||||||| |||||||||    
T  2396480 gtctctattgtgaatgctctaa 2396501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 45833928 - 45834050
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||| ||| ||||||||||||||||||||| || ||||||||||| ||||||| ||  |||| ||||||||||  ||| |||| ||| ||||||||| |    
T  45833928 atctgggttggagtgattgagtgcttattaa-tattactattaaaaaattataaatgagtgatgtgtacacgtgagacccattttagacctcaaaaattg 45834026  T
Q  120 atgtctctattgtggatgctctaa 143  Q
    |||||||  |||| ||||||||||    
T  45834027 atgtctcctttgtagatgctctaa 45834050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 26699099 - 26699209
Alignment:
Q  33 tgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgt 132  Q
    ||||||||| ||||||| ||| |||||||||||  ||||||| |  |||| |||||| |||| | | ||||||| || ||||||| |||||||| |||||    
T  26699099 tgattgagttcttattagatattactattaaaaatttataagcgagtgatgtgtacatgtgggatccatttaagtacccaaaaatggatgtctccattgt 26699198  T
Q  133 ggatgctctaa 143  Q
    |||||||||||    
T  26699199 ggatgctctaa 26699209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 49211125 - 49211227
Alignment:
Q  38 gagtgcttattaaatactactattaaaata-ttataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtggat 136  Q
    |||| ||||||| ||||||||||||||| | |||||| |  |||||||||||||||| |||||||||||| ||||||||||  ||||||  ||| |||||    
T  49211125 gagttcttattagatactactattaaaaaaattataaataaatgatatgtacacgtgaaacctatttaagtactcaaaaatgaatgtcttcattatggat 49211224  T
Q  137 gct 139  Q
    |||    
T  49211225 gct 49211227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 52199882 - 52200000
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||| ||| |||||||||| |||||||||  |||||||||||||| ||||||| ||  |||  ||| ||||||| ||| |||||||||| ||||||| |    
T  52199882 atctgggttggagtgattgaatgcttattaggtactactattaaaaaattataaatgagtgacgtgtgcacgtgggacccatttaagaacccaaaaatgg 52199981  T
Q  120 atgtctctattgtggatgc 138  Q
     ||||||  ||||||||||    
T  52199982 gtgtctccgttgtggatgc 52200000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 10180643 - 10180534
Alignment:
Q  35 attgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtgg 134  Q
    ||||||| |||||||  |||||||||||||| ||||||| ||  |||||||||||||||  | | ||||||| ||| |||||| |  ||||| ||||||     
T  10180643 attgagttcttattaggtactactattaaaaaattataaatgagtgatatgtacacgtgagatccatttaagtacttaaaaatgggagtctccattgtga 10180544  T
Q  135 atgctctaaa 144  Q
    ||||||||||    
T  10180543 atgctctaaa 10180534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 23359191 - 23359248
Alignment:
Q  30 gagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgta 87  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| || ||||| ||||    
T  23359191 gagtgattgagtgcttattagatactactattaaaaaattataaatgaatgatgtgta 23359248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 822424 - 822301
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||| ||| ||| |||||||| ||||||| ||||||||||||||| | ||||| |  ||||| |||||| |||||||| |||||| |||  |||||| |    
T  822424 atctgggttggagggattgagtacttattagatactactattaaaaaactataaataaatgatgtgtacatgtggaacccatttaaaaacctaaaaatgg 822325  T
Q  120 atgtctctattgtggatgctctaaa 144  Q
    || ||| | |||||| |||||||||    
T  822324 atatct-ttttgtgggtgctctaaa 822301  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 35332028 - 35331905
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||| ||| ||||||||||||||||||||  |||||||||||||| | ||||| |   | || |||| |||||| ||  |||||| |||  |||||| |    
T  35332028 atctgggttggagtgattgagtgcttattatgtactactattaaaaaagtataaataagtaatgtgtatacgtgggactcatttaacaaccaaaaaatgg 35331929  T
Q  120 atgtctctattgtggatgctctaa 143  Q
    || |||| ||||||||||||||||    
T  35331928 atatctccattgtggatgctctaa 35331905  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 35382409 - 35382303
Alignment:
Q  19 aatctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaata 118  Q
    |||||| ||| |||||||||| |||||||||  |||||||||||||| ||||||| || ||||  |||||||| |  ||| |||||| ||| ||||||||    
T  35382409 aatctgggttggagtgattgaatgcttattatgtactactattaaaaaattataaatgaatgaggtgtacacg-gagacccatttaataacccaaaaata 35382311  T
Q  119 gatgtctc 126  Q
    | ||||||    
T  35382310 ggtgtctc 35382303  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 44500587 - 44500645
Alignment:
Q  34 gattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgt 92  Q
    |||| |||||||||||||||||| |||||||||||||||| ||  ||| ||||||||||    
T  44500587 gattaagtgcttattaaatactattattaaaatattataaatgagtgacatgtacacgt 44500645  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 8892401 - 8892340
Alignment:
Q  78 atgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtggatgct 139  Q
    ||||| |||||| |||| ||||||||||| ||| ||||||  ||||||||||||||||||||    
T  8892401 atgatgtgtacatgtgggacctatttaagtactaaaaaatgaatgtctctattgtggatgct 8892340  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 35144467 - 35144588
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||| ||| ||| |||||| ||||||||| ||||||||| ||||| ||||||| |   |||||||||||||||  ||| ||||||  ||  ||||||||    
T  35144467 atctgggttggagggattgaatgcttattagatactactactaaaaaattataaataattgatatgtacacgtgagacccatttaaataccaaaaaatag 35144566  T
Q  120 atgtctctattgtggatgctct 141  Q
     ||| || |||||| |||||||    
T  35144567 gtgtatccattgtgaatgctct 35144588  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 39629238 - 39629185
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataa 73  Q
    ||||| ||| |||||||| ||||||||||| ||||||||||||||| |||||||    
T  39629238 atctgggttggagtgatttagtgcttattagatactactattaaaaaattataa 39629185  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 30615683 - 30615730
Alignment:
Q  98 ctatttaagaactcaaaaatagatgtctctattgtggatgctctaaag 145  Q
    ||||||||| ||||||||||| ||||| |||||||||| |||||||||    
T  30615683 ctatttaagtactcaaaaataaatgtcactattgtggaagctctaaag 30615730  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 41916029 - 41915987
Alignment:
Q  23 tgagttagagtgattgagtgcttattaaatactactattaaaa 65  Q
    |||||||||| |||| |||| ||||||||||||||||||||||    
T  41916029 tgagttagagagattaagtgtttattaaatactactattaaaa 41915987  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 38865025 - 38864972
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataa 73  Q
    ||||| ||| |||||||| ||||||| |||| |||||||||||||| |||||||    
T  38865025 atctgggttggagtgattaagtgctttttaagtactactattaaaaaattataa 38864972  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 53455118 - 53455082
Alignment:
Q  35 attgagtgcttattaaatactactattaaaatattat 71  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  53455118 attgagtacttattaaatactattattaaaatattat 53455082  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 41520892 - 41520785
Alignment:
Q  34 gattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtg 133  Q
    |||||||| |||||||  ||| |||||||||| ||||||| |   |||| |||||||||| |||| ||||||||||  |||||| |||||||| ||||||    
T  41520892 gattgagttcttattaggtaccactattaaaaaattataaataagtgatgtgtacacgtgaaacccatttaagaaccaaaaaatggatgtctccattgtg 41520793  T
Q  134 gatgctct 141  Q
    ||||||||    
T  41520792 gatgctct 41520785  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 7293160 - 7293245
Alignment:
Q  55 tactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtggatgctc 140  Q
    ||||||||||| ||||||| || ||||| || || ||||| ||| |||||||||| ||||||| ||| ||||||||||||||||||    
T  7293160 tactattaaaaaattataaatgaatgatgtgcacgcgtgggacccatttaagaacccaaaaatggatatctctattgtggatgctc 7293245  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 1309797 - 1309733
Alignment:
Q  30 gagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtgg 94  Q
    |||||||||||||||||||| |||||| |||||||| ||||||| |  ||||||| |||||||||    
T  1309797 gagtgattgagtgcttattagatactattattaaaaaattataaataaatgatatatacacgtgg 1309733  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 13755191 - 13755100
Alignment:
Q  26 gttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaat 117  Q
    ||||||| |||||||| |||||||| |||||||||||||| ||||||| ||  |||| ||||||||||| |||  |||||| ||| ||||||    
T  13755191 gttagagggattgagttcttattaagtactactattaaaaaattataaatgagtgatgtgtacacgtgggacccgtttaagtactaaaaaat 13755100  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 13768592 - 13768501
Alignment:
Q  26 gttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaat 117  Q
    ||||||| |||||||| |||||||| |||||||||||||| ||||||| ||  |||| ||||||||||| |||  |||||| ||| ||||||    
T  13768592 gttagagggattgagttcttattaagtactactattaaaaaattataaatgagtgatgtgtacacgtgggacccgtttaagtactaaaaaat 13768501  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 55222601 - 55222689
Alignment:
Q  51 atactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctattgtggatgct 139  Q
    ||||||||||||||| ||||||| ||  |||||||||||||||  ||| ||||||||||  ||||||  ||||||| | ||||||||||    
T  55222601 atactactattaaaaaattataaatgactgatatgtacacgtgagacccatttaagaacctaaaaatgaatgtctccaatgtggatgct 55222689  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 46006122 - 46006002
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||| ||| |||||||||| || ||||||  |||||||||||||| ||||||| ||  |||| ||||||||||  |||||| ||| ||| |||||||||    
T  46006122 atctgggttggagtgattgaatg-ttattaggtactactattaaaaaattataaatgagtgatgtgtacacgtgagacctatctaaaaacccaaaaatag 46006024  T
Q  120 atgtctctattgtggatgctct 141  Q
     ||| || || || ||||||||    
T  46006023 gtgtgtccatcgtagatgctct 46006002  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 29950820 - 29950707
Alignment:
Q  30 gagtgattgagtgcttattaaatactactattaaaatattataagtg---gatg-atatgtacacgtggaacctatttaagaactcaaaaatagatgtct 125  Q
    |||||||||||||||||||| ||||||||||||||| | ||||| ||   |||| || | |||| |||| ||| || ||||||| ||||||| | |||||    
T  29950820 gagtgattgagtgcttattagatactactattaaaaaaatataaatgagtgatgtatgtatacaagtgggacccatataagaacccaaaaat-ggtgtct 29950722  T
Q  126 ctattgtggatgctc 140  Q
    | |||||||||||||    
T  29950721 ccattgtggatgctc 29950707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 29999974 - 29999861
Alignment:
Q  30 gagtgattgagtgcttattaaatactactattaaaatattataagtg---gatg-atatgtacacgtggaacctatttaagaactcaaaaatagatgtct 125  Q
    |||||||||||||||||||| ||||||||||||||| | ||||| ||   |||| || | |||| |||| ||| || ||||||| ||||||| | |||||    
T  29999974 gagtgattgagtgcttattagatactactattaaaaaaatataaatgagtgatgtatgtatacaagtgggacccatataagaacccaaaaat-ggtgtct 29999876  T
Q  126 ctattgtggatgctc 140  Q
    | |||||||||||||    
T  29999875 ccattgtggatgctc 29999861  T

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Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 63636 - 63729
Alignment:
Q  26 gttagagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatag 119  Q
    ||||||| |||||||| |||||||  |||||||||||||| ||||||| |   ||| |||||||||||  ||||||||||| ||  ||||||||    
T  63636 gttagagagattgagtccttattaggtactactattaaaaaattataaattagtgacatgtacacgtgagacctatttaagtaccaaaaaatag 63729  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 32977417 - 32977297
Alignment:
Q  20 atctgagttagagtgattgagtgcttattaaatactactatt-aaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaata 118  Q
    ||||| ||| ||| ||||||||||||||||  |||||||||| |||| || |||| ||  |||| ||||| ||||| ||| ||||||| || |||||||     
T  32977417 atctgggttggagggattgagtgcttattaggtactactattaaaaaaatcataaatgagtgatgtgtacgcgtgggacccatttaagtacccaaaaatg 32977318  T
Q  119 gatgtctctattgtggatgct 139  Q
    | |||||| ||||| ||||||    
T  32977317 ggtgtctccattgtagatgct 32977297  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 31743591 - 31743552
Alignment:
Q  34 gattgagtgcttattaaatactactattaaaatattataa 73  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  31743591 gattgagttcttattagatactactattaaaatattataa 31743552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 32658460 - 32658349
Alignment:
Q  30 gagtgattgagtgcttattaaatactactattaaaatattataagtggatgatatgtacacgtggaacctatttaagaactcaaaaatagatgtctctat 129  Q
    |||||||| |||| ||||||  |||||||||||||| ||||||| ||  |||| ||| ||||||  ||| ||||||||||  ||||||   |||||| |     
T  32658460 gagtgatttagtgtttattaggtactactattaaaaaattataaatgagtgatgtgtccacgtgagacccatttaagaacctaaaaatgagtgtctccac 32658361  T
Q  130 tgtggatgctct 141  Q
    ||||||||||||    
T  32658360 tgtggatgctct 32658349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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