View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_278 (Length: 250)
Name: NF6864A_low_278
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_278 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 18786642 - 18786884
Alignment:
| Q |
9 |
accagagaactgaagaatgaattatctgtacgaatcactcagccctcgannnnnnnaaacatgaaattt-agtgttttgtgaatgtcctttaaatttcca |
107 |
Q |
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| T |
18786642 |
accagagaactgaagaatgaattatctgtacgaatcactcagccctcgatttttttaaacatgaaatttgagtgttttgtgaatgccctttaaatttcca |
18786741 |
T |
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| Q |
108 |
actatgttttgtaggaaagtgaagcgaaaagaaattcagttgaagttgataggttgtcggttagtggcactaccaagttagcagaaaaaatttgctcact |
207 |
Q |
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| T |
18786742 |
actatgttttgtaggaaagtgaagcgaaaagaaattcagttgaagttgataggttgttggttagtggcactaccaagttagcagaaaaaatttgctcact |
18786841 |
T |
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| Q |
208 |
gaagttaaacaaattggatacaagcataaggtttgtcattctt |
250 |
Q |
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| T |
18786842 |
gaagttaaacaaattggatacaagcataaggtttgtcattctt |
18786884 |
T |
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