View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_28 (Length: 429)

Name: NF6864A_low_28
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_28
NF6864A_low_28
[»] chr5 (1 HSPs)
chr5 (1-429)||(3591983-3592415)


Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 3592415 - 3591983
Alignment:
Q  1 tcatgacattagtatccataaacttttggataactgttgcttagattgtttg----atcttcttgatcttgaacaatgcagattgacagtgttcatgaag 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  3592415 tcatgacattagtatccataaacttttggataactgttgcttagattgtttggtcgatcttcttgatcttgaacaatgcagattgacagtgttcatgaag 3592316  T
Q  97 atggtgcagtggtttttaaagatggaaatgcagttattgctgacttcattgtacattgcacagggtattcttagcattccctattagtttttcttttaaa 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3592315 atggtgcagtggtttttaaagatggaaatgcagttatcgctgacttcattgtacattgcacagggtattcttagcattccctattagtttttcttttaaa 3592216  T
Q  197 ccagtttatattgtggacttaagttttaaatcgtaaatgcggctgcaatacaaatgttttggaggaaccgcatttatcgacaatgtcaaaattgcaaagt 296  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3592215 ccagttcatattgtggacttaagttttaaatcgtaaatgcggctgcaatacaaatgttttggaggaaccgcatttatcgacaatgtcaaaattgcaaagt 3592116  T
Q  297 tatagcaacgacaggcacaactgcaatttaaaaccatgttgaggactcaaatatatttaggcataagtaacctgcaattgagacataaagtcttgcatat 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3592115 tatagcaacgacaggcacaactgcaatttaaaaccatgttgaggactcaaatatatttaggcataagtaacctgcaattgagacataaagtcttgcatat 3592016  T
Q  397 taactaaaagaaaaaagtgaaccaatgttgatg 429  Q
    |||||| ||||||||||||||||||||||||||    
T  3592015 taactacaagaaaaaagtgaaccaatgttgatg 3591983  T

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