View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6864A_low_281 (Length: 249)

Name: NF6864A_low_281
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6864A_low_281
NF6864A_low_281
[»] chr1 (14 HSPs)
chr1 (97-241)||(13244107-13244251)
chr1 (1-92)||(13244450-13244541)
chr1 (2-98)||(13080788-13080884)
chr1 (97-166)||(12963575-12963644)
chr1 (11-100)||(19279089-19279178)
chr1 (104-171)||(19278827-19278894)
chr1 (2-99)||(12963797-12963894)
chr1 (4-95)||(13086282-13086373)
chr1 (34-93)||(13094604-13094663)
chr1 (34-93)||(13130033-13130092)
chr1 (44-93)||(13161736-13161785)
chr1 (34-93)||(13101205-13101264)
chr1 (162-241)||(19278730-19278809)
chr1 (11-92)||(13271768-13271849)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 13244251 - 13244107
Alignment:
Q  97 tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtactcagttatacatttgtc 196  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  13244251 tttccccctttcccaatctttccttcattagttcttttagcaggcaataacgagattcatctacatcttcatttcctttgtaatcagttatacatttctc 13244152  T
Q  197 caagaagtggtgaagattttcttttgctgccttgcccttcatctc 241  Q
    |||||| ||||||||||||||| | ||||||||||||||| ||||    
T  13244151 caagaattggtgaagattttctctagctgccttgcccttcttctc 13244107  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13244541 - 13244450
Alignment:
Q  1 agatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaa 92  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13244541 agatttgatagcgcacttgtgctgaaatgccagaggaggatatagcctcaaggtttcacatatggctccatgaaggtaaacaagcttatcaa 13244450  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 13080884 - 13080788
Alignment:
Q  2 gatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagctctt 98  Q
    ||||||||||||||||||||||||||||| | || |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  13080884 gatttgatagcacacttgtgctgaaatgctacagaaggatatagccttaaggcttcacatatggctccatgaaggtaaactagcttatcaagctctt 13080788  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 12963644 - 12963575
Alignment:
Q  97 tttccctctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttc 166  Q
    |||||| ||||||||||||||| |||||||| ||||||||||||||| || |||||||||| || |||||    
T  12963644 tttccccctttcccaatccttccttcattagatcttttagcaggcaagaatgagattcatccacgtcttc 12963575  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 19279178 - 19279089
Alignment:
Q  11 gcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagctctttc 100  Q
    ||||||||||| | |||||  | ||| ||| | |||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  19279178 gcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcacatatagctccatgaagataaactagcttatcaagctctttc 19279089  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 19278894 - 19278827
Alignment:
Q  104 ctttcccaatccttctttcattagttcttttagcaggcaataacgagattcatctacatcttcatttc 171  Q
    ||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||  | ||||||||||    
T  19278894 ctttcccaatctttccttcattagttcttttaccaggcaataatgagattcatccgcgtcttcatttc 19278827  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 12963894 - 12963797
Alignment:
Q  2 gatttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagctcttt 99  Q
    ||||| || ||||||||||| | |||||  | ||||||| | |||||||| | |||||| || ||||||||||| |||||||||||||||||| ||||    
T  12963894 gatttaattgcacacttgtgttcaaatggtataggaggataaagccttaaagcttcacaaatagctccatgaagataaacaagcttatcaagcccttt 12963797  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 13086282 - 13086373
Alignment:
Q  4 tttgatagcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaagct 95  Q
    |||||| |||||||||||||||||||  | ||||||| | ||||| || | ||||||||| |||||||||||||| || || |||| |||||    
T  13086282 tttgattgcacacttgtgctgaaatggtacaggaggataaagcctcaatgcttcacatatagctccatgaaggtacactagtttattaagct 13086373  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 13094604 - 13094663
Alignment:
Q  34 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaag 93  Q
    ||||||| | |||||||||||||||||||| |||||||| ||||| || |||||||||||    
T  13094604 aggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaag 13094663  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 13130033 - 13130092
Alignment:
Q  34 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaag 93  Q
    ||||||| | |||||||||||||||||||| |||||||| ||||| || |||||||||||    
T  13130033 aggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaag 13130092  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 13161736 - 13161785
Alignment:
Q  44 agccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaag 93  Q
    |||||||||||||||||||| |||||||| ||||| || |||||||||||    
T  13161736 agccttaaggtttcacatatagctccatggaggtatactagcttatcaag 13161785  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 13101205 - 13101264
Alignment:
Q  34 aggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaag 93  Q
    ||||||| | ||||| |||||||||||||| |||||||| ||||| || |||||||||||    
T  13101205 aggaggataaagcctcaaggtttcacatatagctccatggaggtacactagcttatcaag 13101264  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 19278809 - 19278730
Alignment:
Q  162 tcttcatttcctttgtactcagttatacatttgtccaagaagtggtgaagattttcttttgctgccttgcccttcatctc 241  Q
    |||||||  |||||||| | || ||||||||||| |||||| | ||||||||||||||| ||| || |||||||| ||||    
T  19278809 tcttcatcacctttgtaataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttcttctc 19278730  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 13271768 - 13271849
Alignment:
Q  11 gcacacttgtgctgaaatgccagaggaggaaatagccttaaggtttcacatatggctccatgaaggtaaacaagcttatcaa 92  Q
    ||||||||||| | |||||  | ||||||| | || || |||||||||||||| ||| ||||||||||||  ||||||||||    
T  13271768 gcacacttgtgatcaaatggtataggaggataaagtctcaaggtttcacatatagctgcatgaaggtaaatcagcttatcaa 13271849  T

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