View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_283 (Length: 249)
Name: NF6864A_low_283
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_283 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 24637021 - 24637260
Alignment:
| Q |
6 |
agaatcacagatcacttctttttcggggaatccatataatttaaacatgaccaaaaaactaattttatttagaaattaaaaaatcatgtttatttttctt |
105 |
Q |
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| T |
24637021 |
agaatcacagatcacttctttttcggggaatccatataatttaaacatgaccaaaaaactaattttatttagaaattaaaaaatcatgtttatttttctt |
24637120 |
T |
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| Q |
106 |
acaaagcttaggaatccaatttgtgaattattaaaccgagaaacagataaaagggaccccaaaaaatgaatcactcaattggttcaattgcgtaaaataa |
205 |
Q |
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| T |
24637121 |
acaaagcttaggaatccaatttgtgaatcattaaactgagaaacagataaaagggaccccaaaaaatgaatcactcaattggttcaattgcgtaaaataa |
24637220 |
T |
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| Q |
206 |
caacatggatccgagttactgctactataagatttgcaaa |
245 |
Q |
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| T |
24637221 |
caacatggatccgagttactgctactataagatttgcaaa |
24637260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 24715589 - 24715669
Alignment:
| Q |
31 |
gggaatccatataatttaaacatgacca-aaaaactaattttatttagaaattaaaaaatcatgtttatttttcttacaaa |
110 |
Q |
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| T |
24715589 |
gggaatccatataatttaaacttgacaataaaaactaatttcatttcgaaattgaaaaatcatgtttctttttctcacaaa |
24715669 |
T |
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