View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_284 (Length: 249)
Name: NF6864A_low_284
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_284 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 45874427 - 45874202
Alignment:
| Q |
11 |
atgaagatcataacatacttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggcttt |
110 |
Q |
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| T |
45874427 |
atgaagatcataacatacttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggcttt |
45874328 |
T |
|
| Q |
111 |
gaagaagtggtctaagcaaattttggaagggttgaattatttgcatgttcatgatccacgtatcattcatagggatctcaattgcagcaatgtgtttatc |
210 |
Q |
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| T |
45874327 |
gaagaagtggtctaagcaaattttggaagggttgaattatttgcatgttcatgatccatgtatcattcatagagatctcaattgcagcaatgtgtttatc |
45874228 |
T |
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| Q |
211 |
aatggaaatactggccaggtatattt |
236 |
Q |
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||||||||||||||||||||| |||| |
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| T |
45874227 |
aatggaaatactggccaggtaaattt |
45874202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 22263850 - 22263632
Alignment:
| Q |
19 |
cataacatacttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggctttgaagaagt |
118 |
Q |
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||||||| ||| |||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
22263850 |
cataacacactgaatttcatcactgaggtttgtacaagtgggaatttgagggagtataggaagaaacataaacatgtttctcttaaggctttgaagaagt |
22263751 |
T |
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| Q |
119 |
ggtctaagcaaattttggaagggttgaattatttgcatgttcatgatccacgtatcattcatagggatctcaattgcagcaatgtgtttatcaatggaaa |
218 |
Q |
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| T |
22263750 |
ggtctaaacaaatattggaagggttgaattatttgcatgttcatgatccttgtatcatccatagagacctcaattgcagtaatgtgtttgtcaatggaaa |
22263651 |
T |
|
| Q |
219 |
tactggccaggtatatttt |
237 |
Q |
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||||||||||||| ||||| |
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| T |
22263650 |
tactggccaggtaaatttt |
22263632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 22269990 - 22270208
Alignment:
| Q |
19 |
cataacatacttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggctttgaagaagt |
118 |
Q |
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||||||| ||| |||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
22269990 |
cataacacactgaatttcatcactgaggtttgtacaagtgggaatttgagggagtataggaagaaacataaacatgtttctcttaaggctttgaagaagt |
22270089 |
T |
|
| Q |
119 |
ggtctaagcaaattttggaagggttgaattatttgcatgttcatgatccacgtatcattcatagggatctcaattgcagcaatgtgtttatcaatggaaa |
218 |
Q |
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| T |
22270090 |
ggtctaaacaaatattggaagggttgaattatttgcatgttcatgatccttgtatcatccatagagacctcaattgcagtaatgtgtttgtcaatggaaa |
22270189 |
T |
|
| Q |
219 |
tactggccaggtatatttt |
237 |
Q |
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||||||||||||| ||||| |
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| T |
22270190 |
tactggccaggtaaatttt |
22270208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 10083060 - 10082840
Alignment:
| Q |
11 |
atgaagatcataacatacttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggcttt |
110 |
Q |
| |
|
|||| |||||||| | ||| |||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||| || | ||||| |
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| T |
10083060 |
atgatgatcataatacactgaatttcatcactgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagcttt |
10082961 |
T |
|
| Q |
111 |
gaagaagtggtctaagcaaattttggaagggttgaattatttgcatgttcatgatccacgtatcattcatagggatctcaattgcagcaatgtgtttatc |
210 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||| ||||| ||| || |
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| T |
10082960 |
gaagaagtggtctaagcagattttgaaagggttgaattatttgcatgtgcatgatccttgtatcattcatagagacctcaattgcagtaatgtttttgtc |
10082861 |
T |
|
| Q |
211 |
aatggaaatactggccaggta |
231 |
Q |
| |
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|| ||||| || || |||||| |
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| T |
10082860 |
aacggaaacaccggtcaggta |
10082840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 41245808 - 41245605
Alignment:
| Q |
28 |
cttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggctttgaagaagtggtctaagc |
127 |
Q |
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|||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||| |||||||| ||||| | || |
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| T |
41245808 |
cttaatttcatcaccgaggtttgtacaagtgggaatttgagagagtataggaagaaacatagacatgtttctatgaaggcattgaagaaatggtcaaggc |
41245709 |
T |
|
| Q |
128 |
aaattttggaagggttgaattatttgcatgttcatgatccacgtatcattcatagggatctcaattgcagcaatgtgtttatcaatggaaatactggcca |
227 |
Q |
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| ||| || ||||||||||||||||||| |||||| || | ||||||||||| |||||||||||||| ||||||||| | ||||| ||| |||||| |
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| T |
41245708 |
agattctgaaagggttgaattatttgcacactcatgagccttgcatcattcatagagatctcaattgcagtaatgtgtttgttaatgggaatgttggcca |
41245609 |
T |
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| Q |
228 |
ggta |
231 |
Q |
| |
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|||| |
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|
| T |
41245608 |
ggta |
41245605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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