View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6864A_low_286 (Length: 249)
Name: NF6864A_low_286
Description: NF6864A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6864A_low_286 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 3271724 - 3271967
Alignment:
| Q |
6 |
actgatatgaatagtttattactatcatttatggtatcatattcaatttgtaatggtattgaaatccaatctggacctctgtgaatgatcaatatatact |
105 |
Q |
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| T |
3271724 |
actgacatgaatagttcattactatcatttatggtatcctattcaatttgtaatggtattgaaatccaatctggagctctgtgaatgatcaatatatact |
3271823 |
T |
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| Q |
106 |
cttccatcacatagagacaattgtttaagacattgaatttaagcagatgttctaacatttggacaaacggtgaatgcatgtaacaaatgttnnnnnnnnn |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
3271824 |
cttccatcacatagagacaattgtttaagacattgaatttaagcagatgttctaacatttggacaaacggtgaatacatggaacaaatgttaaaaacaaa |
3271923 |
T |
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| Q |
206 |
nnnnnnncgctatgctgagctgtgagacaaagaatcaaatatga |
249 |
Q |
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| T |
3271924 |
cacaaaacgctatgctgagctgtgagacaaagaatctaatatga |
3271967 |
T |
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